View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_33 (Length: 304)
Name: NF0906_low_33
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 109 - 263
Target Start/End: Original strand, 24890876 - 24891030
Alignment:
| Q |
109 |
gaatcagaagcttctttgaggagtttttctacaagggtttttgttgttggaggttttggtgttggaatcctatcaattccataagaagaattcatggtgc |
208 |
Q |
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| T |
24890876 |
gaatcagaagcttctttgaggagtttttctataaggttttttgttgttggaggttttggtgttggaatcctttcaattccataagaagaattcatggtgc |
24890975 |
T |
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| Q |
209 |
accatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatg |
263 |
Q |
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| T |
24890976 |
accatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatg |
24891030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 109 - 263
Target Start/End: Complemental strand, 24906550 - 24906396
Alignment:
| Q |
109 |
gaatcagaagcttctttgaggagtttttctacaagggtttttgttgttggaggttttggtgttggaatcctatcaattccataagaagaattcatggtgc |
208 |
Q |
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| T |
24906550 |
gaatcagaagcttctttgaggagtttttctataaggatttttgttgttggaggttttggtgttggaatcctttcaattccataagaagaattcatggtgc |
24906451 |
T |
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| Q |
209 |
accatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatg |
263 |
Q |
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| T |
24906450 |
accatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatg |
24906396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 109 - 263
Target Start/End: Complemental strand, 24899091 - 24898937
Alignment:
| Q |
109 |
gaatcagaagcttctttgaggagtttttctacaagggtttttgttgttggaggttttggtgttggaatcctatcaattccataagaagaattcatggtgc |
208 |
Q |
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| T |
24899091 |
gaatcagaagcttctttgaggagtttttctataaggatttttgttgttggaggttttggagttggaatcctttcaattccaaaagaagaattcatggtgc |
24898992 |
T |
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| Q |
209 |
accatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatg |
263 |
Q |
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| T |
24898991 |
accatgcttggatgagtctacgaagagtgtggtttggagtgagaataatgagatg |
24898937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 52926083 - 52926182
Alignment:
| Q |
1 |
tcatcagcatttactctggtgattgcggagcggtgagcacgatcctcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtg |
100 |
Q |
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| T |
52926083 |
tcatcagcatttactctggtgattgcggagcggtgagcacgatcttcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtg |
52926182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Complemental strand, 45349697 - 45349668
Alignment:
| Q |
275 |
ttatctctctgtgttttcctgtaatgtaat |
304 |
Q |
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| T |
45349697 |
ttatctctctgtgttttcctgtaatgtaat |
45349668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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