View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_34 (Length: 301)
Name: NF0906_low_34
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 18185148 - 18185407
Alignment:
| Q |
30 |
aactcttgtgatggttatgtagctgttagtattgtgtttgtacctttctttgagcttgttaatttggctcgagtttatttcctcggggtgt--gaatttg |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |
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| T |
18185148 |
aactcttgtgatggttatgtagctgttagtattgtgtttgtacctttctttgagcttgttaatttggctcgagtttattttctaggggtgtgtgaatttg |
18185247 |
T |
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| Q |
128 |
gactgtcttttgttggtcctgtgaccatattagaatttctcttgttttaaaccggctagttgcaatgttttgtatcacttttgaccatatcatgggtaca |
227 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
18185248 |
gactgtgttttgttggtcctctgaccatattagaatttctcttattttaaaccggctaattgcaatgtattgtatcacttttgaccatatcatgggtaca |
18185347 |
T |
|
| Q |
228 |
cattgtgctaagataatagttaccatggtttttctgagggtttattcccttttgctcctt |
287 |
Q |
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| T |
18185348 |
cgttgtgctgagataatagttaccatggtttttctgagggtttattcccttttgctcctt |
18185407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 35790027 - 35789958
Alignment:
| Q |
36 |
tgtgatggttatgtagctgttagtattgtgtttgtacctttctttgagcttgttaatttggctcgagttt |
105 |
Q |
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| T |
35790027 |
tgtgatggttatgtaactattagtattgtgtttgtacatgtctttgagcttgttaatttgggtcgagttt |
35789958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 35789906 - 35789859
Alignment:
| Q |
243 |
atagttaccatggtttttctgagggtttattcccttttgctccttcat |
290 |
Q |
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| T |
35789906 |
atagttaccatagtttttctgagggtttattcctttttgcaccttcat |
35789859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 25199095 - 25199125
Alignment:
| Q |
140 |
ttggtcctgtgaccatattagaatttctctt |
170 |
Q |
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| T |
25199095 |
ttggtcctgtgaccatattagaatttctctt |
25199125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 2008552 - 2008580
Alignment:
| Q |
140 |
ttggtcctgtgaccatattagaatttctc |
168 |
Q |
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| T |
2008552 |
ttggtcctgtgaccatattagaatttctc |
2008580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 169
Target Start/End: Original strand, 8971576 - 8971610
Alignment:
| Q |
135 |
ttttgttggtcctgtgaccatattagaatttctct |
169 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
8971576 |
tttttttggtcctgtgaccatattagaatttctct |
8971610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 24241630 - 24241660
Alignment:
| Q |
140 |
ttggtcctgtgaccatattagaatttctctt |
170 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24241630 |
ttggtcctgtgaccatattagaatttctctt |
24241660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 30208351 - 30208379
Alignment:
| Q |
140 |
ttggtcctgtgaccatattagaatttctc |
168 |
Q |
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| T |
30208351 |
ttggtcctgtgaccatattagaatttctc |
30208379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 3870180 - 3870208
Alignment:
| Q |
140 |
ttggtcctgtgaccatattagaatttctc |
168 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
3870180 |
ttggtcctgtgaccatattagaatttctc |
3870208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 34480083 - 34480055
Alignment:
| Q |
140 |
ttggtcctgtgaccatattagaatttctc |
168 |
Q |
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| T |
34480083 |
ttggtcctgtgaccatattagaatttctc |
34480055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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