View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_35 (Length: 289)
Name: NF0906_low_35
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 35054715 - 35054526
Alignment:
| Q |
41 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattataataatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054715 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattatagtaatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
35054616 |
T |
|
| Q |
141 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatg |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054615 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatg |
35054526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 35071457 - 35071268
Alignment:
| Q |
41 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattataataatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
140 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071457 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattatagtaatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
35071358 |
T |
|
| Q |
141 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatg |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071357 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatg |
35071268 |
T |
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