View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0906_low_36 (Length: 285)

Name: NF0906_low_36
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0906_low_36
NF0906_low_36
[»] chr1 (10 HSPs)
chr1 (50-102)||(47507566-47507618)
chr1 (50-112)||(47507653-47507714)
chr1 (50-106)||(49586244-49586301)
chr1 (49-104)||(49317044-49317099)
chr1 (52-106)||(14442409-14442463)
chr1 (68-106)||(29070615-29070653)
chr1 (52-106)||(29070705-29070759)
chr1 (52-106)||(41562995-41563049)
chr1 (52-102)||(49586335-49586385)
chr1 (52-104)||(27732274-27732326)
[»] chr8 (3 HSPs)
chr8 (52-106)||(43295976-43296030)
chr8 (52-97)||(40372254-40372299)
chr8 (52-106)||(34540753-34540807)
[»] scaffold1266 (2 HSPs)
scaffold1266 (50-103)||(131-184)
scaffold1266 (52-94)||(218-260)
[»] chr5 (9 HSPs)
chr5 (61-109)||(22012586-22012634)
chr5 (52-102)||(35099594-35099644)
chr5 (62-106)||(884876-884920)
chr5 (50-109)||(6279496-6279554)
chr5 (67-106)||(19216389-19216428)
chr5 (68-106)||(884982-885020)
chr5 (52-102)||(16052643-16052693)
chr5 (52-97)||(19216293-19216338)
chr5 (52-100)||(31927124-31927172)
[»] chr4 (8 HSPs)
chr4 (50-106)||(3435236-3435292)
chr4 (61-115)||(35820514-35820568)
chr4 (62-111)||(41553988-41554037)
chr4 (52-112)||(3435142-3435202)
chr4 (61-97)||(35820612-35820648)
chr4 (52-102)||(33118200-33118250)
chr4 (52-106)||(41554083-41554137)
chr4 (52-102)||(46462382-46462432)
[»] chr6 (6 HSPs)
chr6 (52-110)||(17182629-17182688)
chr6 (52-106)||(3673860-3673914)
chr6 (52-106)||(33122943-33122997)
chr6 (68-111)||(3673765-3673808)
chr6 (67-97)||(7358962-7358992)
chr6 (52-97)||(17182549-17182594)
[»] chr3 (9 HSPs)
chr3 (52-111)||(53739531-53739590)
chr3 (52-106)||(30675082-30675136)
chr3 (52-112)||(39009827-39009887)
chr3 (52-104)||(43493884-43493936)
chr3 (68-106)||(39009916-39009954)
chr3 (52-106)||(53739441-53739495)
chr3 (70-109)||(19227260-19227299)
chr3 (52-93)||(19227166-19227207)
chr3 (50-106)||(35504875-35504931)
[»] chr2 (6 HSPs)
chr2 (61-106)||(23962271-23962316)
chr2 (52-97)||(43341217-43341262)
chr2 (52-106)||(23962361-23962415)
chr2 (52-102)||(43341131-43341181)
chr2 (68-106)||(25312460-25312498)
chr2 (52-106)||(25312550-25312604)
[»] scaffold0263 (1 HSPs)
scaffold0263 (50-102)||(19879-19931)
[»] chr7 (5 HSPs)
chr7 (50-109)||(33628782-33628841)
chr7 (52-106)||(31741968-31742022)
chr7 (50-106)||(27115321-27115377)
chr7 (69-97)||(8269964-8269992)
chr7 (78-106)||(31741921-31741949)
[»] scaffold0018 (1 HSPs)
scaffold0018 (52-106)||(153998-154052)
[»] scaffold0014 (1 HSPs)
scaffold0014 (61-106)||(133234-133279)


Alignment Details
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 47507618 - 47507566
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  47507618 taatttattaaatgaatctaaaaagtgaaaaattgcttacatttgagatcgga 47507566  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 47507653 - 47507714
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagtt 112  Q
    |||||||||  |||||||||||||||||||| |||||||||||| ||| |||||||| |||||    
T  47507653 taatttattgaatgaatctaaaaagtgaaaaattgcttacatttaaga-cggagggagtagtt 47507714  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 49586301 - 49586244
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaa-gttgcttacatttgagatcggaggga 106  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||||| ||||||||    
T  49586301 taatttattaaatgaacctaaaaaatgaaaaagttgcttacatttgagaccggaggga 49586244  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 49317044 - 49317099
Alignment:
Q  49 ttaatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagg 104  Q
    ||||||||||  |||||||||||||||  ||| || ||||||||||||||||||||    
T  49317044 ttaatttattgaatgaatctaaaaagtacaaaatttcttacatttgagatcggagg 49317099  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 14442463 - 14442409
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  |||||||||||| |||||||||| ||||||||||||| | ||||||    
T  14442463 atttattgaatgaatctaaaaggtgaaaagtttcttacatttgagaccagaggga 14442409  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 29070653 - 29070615
Alignment:
Q  68 taaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  29070653 taaaaagtaaaaagttgcttacatttgagaccggaggga 29070615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 29070705 - 29070759
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  ||||| |||||| ||||||| |||||||||||||||| ||||||||    
T  29070705 atttattgaatgaacctaaaatgtgaaaaattgcttacatttgagaccggaggga 29070759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 41563049 - 41562995
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  ||||| ||||||| ||||||||| ||||||||||||| ||||||||    
T  41563049 atttattgaatgaacctaaaaaatgaaaagtttcttacatttgagaccggaggga 41562995  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 49586335 - 49586385
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||  ||||| ||||||||||||||||| |||| |||||||||||||    
T  49586335 atttattgaatgaacctaaaaagtgaaaagttacttatatttgagatcgga 49586385  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 27732274 - 27732326
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagg 104  Q
    |||||||  ||||| |||||||||||||||||||||| | |||||| ||||||    
T  27732274 atttattcaatgaacctaaaaagtgaaaagttgcttataattgagaccggagg 27732326  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 43295976 - 43296030
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  43295976 atttattgaatgaatttaaaaagtgaaaagttgcttacatttgagatcggaggga 43296030  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 40372299 - 40372254
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgaga 97  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||    
T  40372299 atttattaaatgaacctaaaaagtgaaaagttgcttacatttgaga 40372254  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 34540753 - 34540807
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||| ||||| || |||||| ||||||||||| ||||||||| ||||||||    
T  34540753 atttattaaatgaacctcaaaagtaaaaagttgcttccatttgagaccggaggga 34540807  T

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Target: scaffold1266 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold1266
Description:

Target: scaffold1266; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 184 - 131
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggag 103  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  184 taatttattaaatgaatctaaaaagtgaaaaattggttacatttgagatcggag 131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1266; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 218 - 260
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttg 94  Q
    |||||||  |||||||||||||||||||||||| |||||||||    
T  218 atttattgaatgaatctaaaaagtgaaaagttggttacatttg 260  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 22012634 - 22012586
Alignment:
Q  61 atgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaata 109  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  22012634 atgaatctaaaaagtgaaaagtttcttacatttgagattggagggaata 22012586  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 35099644 - 35099594
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||| |||||||||||||| ||||| || ||||||||||||||||||    
T  35099644 atttattaaatgaatctaaaaagagaaaaattacttacatttgagatcgga 35099594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 106
Target Start/End: Complemental strand, 884920 - 884876
Alignment:
Q  62 tgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||    
T  884920 tgaacctaaaaagtgaaaagtttcttatatttgagatcggaggga 884876  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 6279496 - 6279554
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaata 109  Q
    |||||||||  |||||| |||||||| |||||||| |||||||||||| |||||||||||    
T  6279496 taatttattgaatgaatataaaaagt-aaaagttgtttacatttgagaccggagggaata 6279554  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 106
Target Start/End: Original strand, 19216389 - 19216428
Alignment:
Q  67 ctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    ||||||||||||||||||||||||||||||| | ||||||    
T  19216389 ctaaaaagtgaaaagttgcttacatttgagaccagaggga 19216428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 884982 - 885020
Alignment:
Q  68 taaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||| ||||||||| ||||||||||||||||||||||    
T  884982 taaaaaatgaaaagtttcttacatttgagatcggaggga 885020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 16052693 - 16052643
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||  |||||| ||||||||||||||||||||| |||||||| ||||    
T  16052693 atttattggatgaatttaaaaagtgaaaagttgcttatatttgagaccgga 16052643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 19216338 - 19216293
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgaga 97  Q
    |||||||  ||||| ||||||| |||||||||||||||||||||||    
T  19216338 atttattgaatgaacctaaaaaatgaaaagttgcttacatttgaga 19216293  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 31927124 - 31927172
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcg 100  Q
    |||||||  ||||||||||||| | |||||||| |||||||||||||||    
T  31927124 atttattgaatgaatctaaaaaataaaaagttgtttacatttgagatcg 31927172  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 3435236 - 3435292
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  3435236 taatttattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggaggga 3435292  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 35820568 - 35820514
Alignment:
Q  61 atgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagttctt 115  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| |||| |||||    
T  35820568 atgaacctaaaaagtgaaaagttgcttacatttgagaccggaggaaataattctt 35820514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 41554037 - 41553988
Alignment:
Q  62 tgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagt 111  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||| ||||    
T  41554037 tgaatctaaaaagtgaaaatttgcttacattttagaccggagggagtagt 41553988  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 3435202 - 3435142
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagtt 112  Q
    |||||||  ||||| || ||||||||||||||||||||||||||||  ||||||| |||||    
T  3435202 atttattgaatgaacctcaaaagtgaaaagttgcttacatttgagactggagggagtagtt 3435142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 35820612 - 35820648
Alignment:
Q  61 atgaatctaaaaagtgaaaagttgcttacatttgaga 97  Q
    ||||| |||||||||||||||||||||||||||||||    
T  35820612 atgaacctaaaaagtgaaaagttgcttacatttgaga 35820648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 33118250 - 33118200
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||| ||| |||||| |||||| |||||||||| |||||||||||||||||    
T  33118250 atttgttaaatgaatttaaaaaatgaaaagttgtttacatttgagatcgga 33118200  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 41554083 - 41554137
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  ||||| |||||||||||||| |||||||||||||||| || |||||    
T  41554083 atttattgaatgaacctaaaaagtgaaaaattgcttacatttgagaccgaaggga 41554137  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 46462432 - 46462382
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||  |||||||||||||||||||||||||||| | || ||||||||    
T  46462432 atttatttaatgaatctaaaaagtgaaaagttgcttataattaagatcgga 46462382  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 17182629 - 17182688
Alignment:
Q  52 atttattatatgaatctaaaa-agtgaaaagttgcttacatttgagatcggagggaatag 110  Q
    |||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  17182629 atttattaaatgaatctaaaaaagtgaaaagttgcttacatttcagaccggagggaatag 17182688  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 3673860 - 3673914
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  |||||||||||||||||||||| |||||||||||||| ||||||||    
T  3673860 atttattgaatgaatctaaaaagtgaaaagtcgcttacatttgagaccggaggga 3673914  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 33122943 - 33122997
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||| |||||||||||||||||||| || ||||||||| ||||||||||||    
T  33122943 atttattaaatgaatctaaaaagtgaaaaatttcttacatttaagatcggaggga 33122997  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 111
Target Start/End: Complemental strand, 3673808 - 3673765
Alignment:
Q  68 taaaaagtgaaaagttgcttacatttgagatcggagggaatagt 111  Q
    |||||| |||||||| ||||||||||||||||||||||| ||||    
T  3673808 taaaaaatgaaaagtcgcttacatttgagatcggagggagtagt 3673765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 97
Target Start/End: Original strand, 7358962 - 7358992
Alignment:
Q  67 ctaaaaagtgaaaagttgcttacatttgaga 97  Q
    |||||||||||||||||||||||||||||||    
T  7358962 ctaaaaagtgaaaagttgcttacatttgaga 7358992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 17182594 - 17182549
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgaga 97  Q
    |||||||  ||||| ||||||||||||||||| |||||||||||||    
T  17182594 atttattgaatgaacctaaaaagtgaaaagttacttacatttgaga 17182549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 53739531 - 53739590
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagt 111  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||| |||||||| ||||    
T  53739531 atttattgaatgaacctaaaaagtgaaaagttgcttacatttgagaccggagggagtagt 53739590  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 30675136 - 30675082
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||    
T  30675136 atttattaaatgaacctaaaaagtgaaaagtttcttacatttgagaccggaggga 30675082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 39009887 - 39009827
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaatagtt 112  Q
    |||||||  ||||| || |||||||||||||||||||||||||||| |||||||| |||||    
T  39009887 atttattgaatgaacctcaaaagtgaaaagttgcttacatttgagaccggagggagtagtt 39009827  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 43493884 - 43493936
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagg 104  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||| ||||||    
T  43493884 atttattagatgaatttaaaaagtgaaaagttgtttacatttgagaccggagg 43493936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 39009916 - 39009954
Alignment:
Q  68 taaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  39009916 taaaaagtgaaaagttgcttacatttgagaccggaggga 39009954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Complemental strand, 53739495 - 53739441
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  ||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  53739495 atttattgaatgaacctaaaaagtaaaaagttgcttacatttgagaccggaggga 53739441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 109
Target Start/End: Original strand, 19227260 - 19227299
Alignment:
Q  70 aaaagtgaaaagttgcttacatttgagatcggagggaata 109  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  19227260 aaaagtgaaaagttgcttacatttgaaatcagagggaata 19227299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 19227207 - 19227166
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacattt 93  Q
    ||||||||  ||||||||||||||||||||||||||| ||||    
T  19227207 atttattaagtgaatctaaaaagtgaaaagttgcttatattt 19227166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 35504875 - 35504931
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||||  |||||  ||||||||||||| || ||||||||||||| ||||||||    
T  35504875 taatttatttaatgaacttaaaaagtgaaaaatttcttacatttgagaccggaggga 35504931  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 23962316 - 23962271
Alignment:
Q  61 atgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||    
T  23962316 atgaacctaaaaagtgaaaagttgcttacatttgagaccggaggga 23962271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 43341217 - 43341262
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgaga 97  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||    
T  43341217 atttattaaatgaatctaaaaagtaaaaagttgcttacatttgaga 43341262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 23962361 - 23962415
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||| ||||||||    
T  23962361 atttattgaatgaatctaaaaagtaaaaagttgcttacaattgagaccggaggga 23962415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 43341181 - 43341131
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||  ||||||||||||||| ||||||||||||| ||||||||||||    
T  43341181 atttattgaatgaatctaaaaagtaaaaagttgcttacgtttgagatcgga 43341131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 25312498 - 25312460
Alignment:
Q  68 taaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  25312498 taaaaagtgaaaaattgcttacatttgagaccggaggga 25312460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 25312550 - 25312604
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||  ||||| ||||||||| ||||||||||| ||||||||| ||||||||    
T  25312550 atttattgaatgaacctaaaaagtaaaaagttgcttgcatttgagaccggaggga 25312604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 19879 - 19931
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcgga 102  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||||| ||||    
T  19879 taatttattaaatgaatctaaaaagtgaaaaattggttacatttgagaccgga 19931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 33628782 - 33628841
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggagggaata 109  Q
    |||||||||| |||||||||||| ||||||| ||  ||||||||||||||| ||||||||    
T  33628782 taatttattaaatgaatctaaaatgtgaaaaattatttacatttgagatcgaagggaata 33628841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 31741968 - 31742022
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||| |||||| ||||||||||||||||| ||| |||| ||||||||||||    
T  31741968 atttattagatgaatttaaaaagtgaaaagttgtttatatttaagatcggaggga 31742022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 27115321 - 27115377
Alignment:
Q  50 taatttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||||  ||||||||||||||||||| |||||||| | |||||| ||||||||    
T  27115321 taatttattcaatgaatctaaaaagtgaaaggttgcttataattgagaccggaggga 27115377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 97
Target Start/End: Original strand, 8269964 - 8269992
Alignment:
Q  69 aaaaagtgaaaagttgcttacatttgaga 97  Q
    |||||||||||||||||||||||||||||    
T  8269964 aaaaagtgaaaagttgcttacatttgaga 8269992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 106
Target Start/End: Complemental strand, 31741949 - 31741921
Alignment:
Q  78 aaagttgcttacatttgagatcggaggga 106  Q
    |||||||||||||||||||||||||||||    
T  31741949 aaagttgcttacatttgagatcggaggga 31741921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 106
Target Start/End: Original strand, 153998 - 154052
Alignment:
Q  52 atttattatatgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    |||||||| |||||||||||||||||||||||  ||| ||||||||| |||||||    
T  153998 atttattaaatgaatctaaaaagtgaaaagttttttatatttgagattggaggga 154052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 133234 - 133279
Alignment:
Q  61 atgaatctaaaaagtgaaaagttgcttacatttgagatcggaggga 106  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||||    
T  133234 atgaacctaaaaagtgaaaaattgcttacatttgagaccggaggga 133279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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