View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0906_low_37 (Length: 280)

Name: NF0906_low_37
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0906_low_37
NF0906_low_37
[»] chr1 (1 HSPs)
chr1 (35-242)||(25698134-25698341)
[»] chr2 (1 HSPs)
chr2 (61-242)||(35208136-35208320)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 25698341 - 25698134
Alignment:
Q  35 gagcatgagaaaatgtggcatttaccttacatttgtatcttcaaggacttggtttacgtcattgcatcttaccattagtgtttgattgctttatagtttg 134  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25698341 gagcatgagaaaatgtggcatttaccttacacttgtatcttcaaggactcggtttacgtcattgcatcttaccattagtgtttgattgctttatagtttg 25698242  T
Q  135 actcctcataacttaaacattcaaccaactagtaaggagagaacttgctcgttcacaaattgtttgagctgattcgttgatattgctccatactttattg 234  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25698241 actcctcataacttggacattcaaccaactagtaaggagagaacttgctcgttcacaaattgtttgagctgattcgttgatattgctccatactttattg 25698142  T
Q  235 ttcctatg 242  Q
    ||||||||    
T  25698141 ttcctatg 25698134  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 35208136 - 35208320
Alignment:
Q  61 ttacatttgtatcttcaaggacttggtttacgtcattgcatcttaccattagtgtttgattgctttatagtttgactcctcataacttaaacattcaacc 160  Q
    |||||||||||| |   ||||||  ||||| | |||||||| | ||||||||| || |||||||   |||||||| | | ||||| |||  |||||||||    
T  35208136 ttacatttgtatatgtgaggactcagtttatgccattgcatttcaccattagtattcgattgctcagtagtttgattacgcataa-ttaggcattcaacc 35208234  T
Q  161 aactagtaaggagagaacttgctcgttcacaaattgtttgagctgattcgtt----gatattgctccatactttattgttcctatg 242  Q
     |||| |||| ||| |  || || ||||||||||||||| ||||||||||||     |||||| |||||||||||||| |||||||    
T  35208235 gactattaagaagaaagttttcttgttcacaaattgtttaagctgattcgttaatatatattgttccatactttattgctcctatg 35208320  T

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