View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0906_low_40 (Length: 251)

Name: NF0906_low_40
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0906_low_40
NF0906_low_40
[»] chr5 (3 HSPs)
chr5 (15-250)||(36847257-36847492)
chr5 (16-250)||(36858525-36858759)
chr5 (63-250)||(6161760-6161947)
[»] chr6 (5 HSPs)
chr6 (31-250)||(6680201-6680420)
chr6 (36-134)||(6772592-6772690)
chr6 (193-250)||(6774198-6774255)
chr6 (40-84)||(6779058-6779102)
chr6 (40-84)||(6669413-6669457)
[»] scaffold0299 (4 HSPs)
scaffold0299 (36-169)||(15804-15937)
scaffold0299 (36-169)||(21375-21508)
scaffold0299 (189-250)||(19520-19581)
scaffold0299 (190-250)||(13962-14022)
[»] chr3 (2 HSPs)
chr3 (78-250)||(46522627-46522802)
chr3 (18-250)||(49882251-49882498)
[»] chr1 (1 HSPs)
chr1 (143-250)||(18136290-18136397)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 36847257 - 36847492
Alignment:
Q  15 tataaagggaaaaagtggatgaaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttat 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36847257 tataaagggaaaaagtggatgaaagtaaaagagaagatagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttat 36847356  T
Q  115 tgttctatttgacacttgtttcaacaacttttcatagtttactctactctctttttcgagggtgttggctactaccatagcattaccgcaccagcagtct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36847357 tgttctatttgacacttgtttcaacaacttttcatagtttactctactctctttttcgagggtgttggctactaccatagcattaccgcaccagcagtct 36847456  T
Q  215 ccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  36847457 ccgtcaaagtatggcaaacgagaagctgtcaccttg 36847492  T

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Target: chr5; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 36858525 - 36858759
Alignment:
Q  16 ataaagggaaaaagtggatgaaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttatt 115  Q
    ||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  36858525 ataaagggaaaaattggatgaaagtaaatgacaagatagacatactttttgcatcaccataatgtctttggaaggcttggcatgtcccatgccctttatt 36858624  T
Q  116 gttctatttgacacttgtttcaacaacttttcatagtttactctactctctttttcgagggtgttggctactaccatagcattaccgcaccagcagtctc 215  Q
    ||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| | |||||||||||||||||| | ||||||||||||||    
T  36858625 gttttatttgacacttgtttcaacaacttttcatagtctccactactctctttttcgagggtctcggctactaccatagcattcctgcaccagcagtctc 36858724  T
Q  216 cgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    |   |||| ||||||||||||||||| ||||||||    
T  36858725 ccataaagcatggcaaacgagaagctatcaccttg 36858759  T

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Target: chr5; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 6161760 - 6161947
Alignment:
Q  63 tttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttattgttctatttgacacttgtttcaacaacttttcatagtttactctact 162  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | ||  |||    
T  6161760 tttgcatcaccagagtctctttggaaggcttggcatgtcccatgtcctttaatgttctatttgacacttgtttcaacaacttctcatagtctcctacact 6161859  T
Q  163 ctctttttcgagggtgttggctactaccatagcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    ||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||| ||||||| |||||||| | ||||||||||||||    
T  6161860 ctctttttcgaaggtcttggctacttccatagcattaccacaccagcagtctccttcaaagtgtggcaaacaaaaagctgtcaccttg 6161947  T

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Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 31 - 250
Target Start/End: Complemental strand, 6680420 - 6680201
Alignment:
Q  31 ggatgaaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttattgttctatttgacact 130  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6680420 ggatgaaagtaaaagagaagatatacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttactgttctatttgacact 6680321  T
Q  131 tgtttcaacaacttttcatagtttactctactctctttttcgagggtgttggctactaccatagcattaccgcaccagcagtctccgtcaaagtatggca 230  Q
    |||||||||||||||||||||| | ||||| |||||||||||||||| || || ||||||| |||||||| |||||| |||||||| |||||||||||||    
T  6680320 tgtttcaacaacttttcatagtctgctctattctctttttcgagggtctttgcaactaccacagcattactgcaccaccagtctccatcaaagtatggca 6680221  T
Q  231 aacgagaagctgtcaccttg 250  Q
    ||||||||||||||||||||    
T  6680220 aacgagaagctgtcaccttg 6680201  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 134
Target Start/End: Original strand, 6772592 - 6772690
Alignment:
Q  36 aaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttattgttctatttgacacttgtt 134  Q
    ||||||||||||||| || |||| |||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||||    
T  6772592 aaagtaaaagagaagatatacatcctttttgcatcaccagaatgtctttggaagacttggcctgtcccaagtcctttactgttctatttgacacttgtt 6772690  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 6774198 - 6774255
Alignment:
Q  193 agcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  6774198 agcattaccgcaccagcggtctccatcaaagtatggcaaacgagaagctgtcaccttg 6774255  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 6779058 - 6779102
Alignment:
Q  40 taaaagagaaggtagacatactttttgcatcaccagaatgtcttt 84  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||    
T  6779058 taaaagagaaggttgacataccttttgcatcaccagaatgtcttt 6779102  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 6669457 - 6669413
Alignment:
Q  40 taaaagagaaggtagacatactttttgcatcaccagaatgtcttt 84  Q
    |||| |||||| | ||||||| |||||||||||||||||||||||    
T  6669457 taaaggagaagtttgacataccttttgcatcaccagaatgtcttt 6669413  T

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Target: scaffold0299 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 15937 - 15804
Alignment:
Q  36 aaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttattgttctatttgacacttgttt 135  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||  ||||||||||    
T  15937 aaagtaaaagagaagatatacatactttttgcatcaccataatgtctttggaagacttggcatgtcccaagtcctttactgttctattcaacacttgttt 15838  T
Q  136 caacaacttttcatagtttactctactctctttt 169  Q
     |||||||||||||||| | ||||||||||||||    
T  15837 taacaacttttcatagtctcctctactctctttt 15804  T

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Target: scaffold0299; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 21508 - 21375
Alignment:
Q  36 aaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttggaaggcttggcatgtcccatgtcctttattgttctatttgacacttgttt 135  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||  ||||||||||    
T  21508 aaagtaaaagagaagatatacatactttttgcatcaccataatgtctttggaagacttggcatgtcccaagtcctttactgttctattctacacttgttt 21409  T
Q  136 caacaacttttcatagtttactctactctctttt 169  Q
     |||||||||||||||| | ||||||||||||||    
T  21408 taacaacttttcatagtctcctctactctctttt 21375  T

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Target: scaffold0299; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 19581 - 19520
Alignment:
Q  189 ccatagcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  19581 ccatagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttg 19520  T

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Target: scaffold0299; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 14022 - 13962
Alignment:
Q  190 catagcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  14022 catagcattaccgcaccggcagtctccatcaaagtatggcaaacgagaagctgtcaccttg 13962  T

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Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 250
Target Start/End: Complemental strand, 46522802 - 46522627
Alignment:
Q  78 tgtctttggaaggcttggcatgtcccatgtcctttattgttctatttgacacttgtt---tcaacaacttttcatagtttactctactctctttttcgag 174  Q
    ||||||||||||| |||||||||||||||  |||||  | |||||||| ||||||||   |||||| ||||||||||| | ||| || ||||||||| |     
T  46522802 tgtctttggaaggattggcatgtcccatggtctttaaagctctatttggcacttgttccttcaacatcttttcatagtctcctccacactctttttcaat 46522703  T
Q  175 ggtgttggctactaccatagcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    ||| |||||| || |||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||    
T  46522702 ggtcttggctgcttccatagcattaccagaccagcagtctccatcaaagtatggcaaacgagaagctgtcaccttg 46522627  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 49882498 - 49882251
Alignment:
Q  18 aaagggaaaaagtggatgaaagtaaaagagaaggtagacatactttttgcatcaccagaatgtctttg------------gaaggcttggcatgtcccat 105  Q
    |||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||            ||||| ||||||||||||||    
T  49882498 aaagggaagacgtggatgaaagtaaaagacaaggtagacatactttttgcatcaccagaatgtctttggcggtgtctttagaaggattggcatgtcccat 49882399  T
Q  106 gtcctttattgttctatttgacacttgt---ttcaacaacttttcatagtttactctactctctttttcgagggtgttggctactaccatagcattaccg 202  Q
    |  |||||  | ||||||||  || |||   ||||||| ||||||||||| | |||  ||||||||||| | |||  ||||| || ||||| ||| ||||    
T  49882398 ggtctttaaagctctatttggtacctgtttcttcaacatcttttcatagtctcctccgctctctttttcaatggtcctggctgcttccataacataaccg 49882299  T
Q  203 caccagcagtctccgtcaaagtatggcaaacgagaagctgtcaccttg 250  Q
    |||||| ||||||| |||||||||||||| ||||||| ||||||||||    
T  49882298 caccagtagtctccatcaaagtatggcaatcgagaagttgtcaccttg 49882251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 18136397 - 18136290
Alignment:
Q  143 ttttcatagtttactctactctctttttcgagggtgttggctactaccatagcattaccgcaccagcagtctccgtcaaagtatggcaaacgagaagctg 242  Q
    |||||||||| | ||| |||||| ||| | | ||| | ||||||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  18136397 ttttcatagtctcctccactctcctttccaaaggtctcggctacttccatagcattactgcaccagcagtctccatcaaagtatgacaaacgagaagctg 18136298  T
Q  243 tcaccttg 250  Q
    ||||||||    
T  18136297 tcaccttg 18136290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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