View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0906_low_45 (Length: 243)
Name: NF0906_low_45
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_45 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 33811001 - 33811221
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811001 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33811100 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
222 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
33811101 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33811200 |
T |
|
| Q |
223 |
gagaaaatagagttttgtaaa |
243 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
33811201 |
gagaagatagagttttgtaaa |
33811221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 243
Target Start/End: Original strand, 33815919 - 33816139
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33815919 |
atcaagaaatttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
33816018 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
222 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
33816019 |
tcattggattcgtgatgtgttggagaataaactgctgcaaatagagaaaattcacaccaatgacaacggagcagatatgatgacaaaagctctaccaaaa |
33816118 |
T |
|
| Q |
223 |
gagaaaatagagttttgtaaa |
243 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
33816119 |
gagaagatagagttttgtaaa |
33816139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 4836462 - 4836246
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4836462 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
4836363 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | ||| | ||| |
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|
| T |
4836362 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacacaaatgagaatggagcagacatgatgacaaaaccgctaccgaaa |
4836263 |
T |
|
| Q |
223 |
gagaaaatagagttttg |
239 |
Q |
| |
|
||||| ||||||||||| |
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|
| T |
4836262 |
gagaagatagagttttg |
4836246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 100 - 239
Target Start/End: Complemental strand, 24380105 - 24379966
Alignment:
| Q |
100 |
tcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagata |
199 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||||||||| |||| |||| || || || |||||||| ||||||||||| | |||||||| || | |
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| T |
24380105 |
tcaaaacacaatgatgtgaggtatcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaataagaatggagccgaca |
24380006 |
T |
|
| Q |
200 |
tgatgacaaaagctctatcaaaagagaaaatagagttttg |
239 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
24380005 |
tgatgacaaaacctctatcaaaagagaagatagagttttg |
24379966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 54968127 - 54967912
Alignment:
| Q |
24 |
tcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtat |
123 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || || ||||||||||| |||||||||||| |
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| T |
54968127 |
tcaagaaagttatgttctctattgcgacagtcagagcgcaattcatctcagcaagaactcaacataccactccagatcaaaacacattgatgtgaggtat |
54968028 |
T |
|
| Q |
124 |
cattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaag |
223 |
Q |
| |
|
|| ||||| ||||||||||| || | |||| || || || |||||||| ||||||||||||| || ||||||||||||||||||||||||||| |||||| |
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|
| T |
54968027 |
cactggattcgtgatgtgttggaaagtaaattgttgaaagtagagaaagttcacaccaatgagaacggagcagatatgatgacaaaagctctaccaaaag |
54967928 |
T |
|
| Q |
224 |
agaaaatagagttttg |
239 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
54967927 |
agaagatagagttttg |
54967912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 2019 - 2235
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||||| || ||||| ||||||||||| || ||||| || || || |||||||| || ||||||||||| |
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|
| T |
2019 |
atcaagaaagctatgttctctattgcgacagtcaaagcgcgattcatctcagcaagaactcaacatatcactccagatcaaaacatattgatgtgaggta |
2118 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
222 |
Q |
| |
|
||| ||||| ||||||||||| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||| ||| ||||| ||||| |
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|
| T |
2119 |
tcactggattcgtgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgaccaaacctctaccaaaa |
2218 |
T |
|
| Q |
223 |
gagaaaatagagttttg |
239 |
Q |
| |
|
||||| || |||||||| |
|
|
| T |
2219 |
gagaagattgagttttg |
2235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 22982057 - 22981841
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| |
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|
| T |
22982057 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
22981958 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
222 |
Q |
| |
|
|| || || ||||||||| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
22981957 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
22981858 |
T |
|
| Q |
223 |
gagaaaatagagttttg |
239 |
Q |
| |
|
|| || || |||||||| |
|
|
| T |
22981857 |
gaaaagattgagttttg |
22981841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 23806351 - 23806567
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || || || |||||||| || |||||||| |
|
|
| T |
23806351 |
atcaaaaaagctatgttctctattgcgacagtcagagtgcgattcatctcagcaagaactcgacataccactctagatcgaaacacattgacgtgaggta |
23806450 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaaa |
222 |
Q |
| |
|
|| || || ||||||||| |||| |||| || || || |||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||| |
|
|
| T |
23806451 |
ccactgtattaatgatgtgttggagagtaaattgttgaaagtagagaaagttcacaccaatgagaatggagcagacatgatgacaaaacctctaccaaaa |
23806550 |
T |
|
| Q |
223 |
gagaaaatagagttttg |
239 |
Q |
| |
|
|| || || |||||||| |
|
|
| T |
23806551 |
gaaaagattgagttttg |
23806567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 1105201 - 1105112
Alignment:
| Q |
85 |
acataccattcaaggtcaaaacacatcgatgtgaggtatcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaatt |
174 |
Q |
| |
|
|||||||||| ||| |||||||||||| |||| || ||||||| |||| ||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
1105201 |
acataccatttaagatcaaaacacatcaatgtaagaaatcattgaatacatgacgtgttagagaataaactgctttaaatagagaaaatt |
1105112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 25003727 - 25003544
Alignment:
| Q |
23 |
atcaagaaagttatgttctctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggta |
122 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || |||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
25003727 |
atcaacaaagttatgttccctattgtgatagtcaaagtgcaattcacctcagaaataactcgacata-caatcaaggtc-aaacacatagatgtgaggta |
25003630 |
T |
|
| Q |
123 |
tcattggatacgtgatgtgttagagaataaactgctgcaaatagagaaaattcacaccaatgacaatggagcagatatgatgacaaaagctctatcaaa |
221 |
Q |
| |
|
| |||||||||||||||| | ||| ||||||| |||||||| ||||| ||||||| || || |||||||||||||| ||||| |||| |
|
|
| T |
25003629 |
---------atgtgatgtgttagagaa-agactactgcaaaaagagaaaa---acaccgatgacaaagggacaaatatgatgacaaaaactctaccaaa |
25003544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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