View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_53 (Length: 210)
Name: NF0906_low_53
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 1e-64; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 7320285 - 7320409
Alignment:
| Q |
1 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
100 |
Q |
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| T |
7320285 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
7320384 |
T |
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| Q |
101 |
ttagtggtgttctactttacttcat |
125 |
Q |
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| T |
7320385 |
ttagtggtgttctactttacttcat |
7320409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 7304283 - 7304407
Alignment:
| Q |
1 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
100 |
Q |
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| T |
7304283 |
gacacaaacatgtacaaccacattgtattaggaaccttgttaccacactacttgtgggttccacttccaagattcttccaaagatggcttcgaaactacg |
7304382 |
T |
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| Q |
101 |
ttagtggtgttctactttacttcat |
125 |
Q |
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|| ||| ||| |||||||||||||| |
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| T |
7304383 |
ttggtgctgtcctactttacttcat |
7304407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 7302270 - 7302394
Alignment:
| Q |
1 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
100 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||| ||||| | ||||||||| | ||| ||| | ||||||||||||||||||||||||||| |
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| T |
7302270 |
gacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtgctactcccacggttcttccaaacatggcttcgaaactacg |
7302369 |
T |
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| Q |
101 |
ttagtggtgttctactttacttcat |
125 |
Q |
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| T |
7302370 |
ttggtgctgtccttctttacttcat |
7302394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 34 - 125
Target Start/End: Original strand, 7281860 - 7281951
Alignment:
| Q |
34 |
accttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactacattagtggtgttctactttacttcat |
125 |
Q |
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|||||||| || ||||| |||||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
7281860 |
accttgttacctcagtttttgtgggtcccacttccaaggttcttccaaacatggcttcgtaactacattggtggtcttctactttacttcat |
7281951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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