View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0906_low_7 (Length: 543)
Name: NF0906_low_7
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 29 - 534
Target Start/End: Original strand, 39485288 - 39485793
Alignment:
| Q |
29 |
aaataataggtcataatacaatataagttgaaactaaattaaattaagcaaaatatctcaaagatttcaactaaattaaatgaatgttctatgaaactgc |
128 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39485288 |
aaataataagtcataatacaatataagttgaaactaaattaaattaagcaaaatatctcaaagatttcaactaaattaaatgaatgttctatgaaactgc |
39485387 |
T |
|
| Q |
129 |
caaatgcaggtaagcatggtatacaacattaaaacaaaggagcacgcataattaaatcaaaacacagtttacaattaaccttaccatttgacaaagggat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39485388 |
caaatgcaggtaagcatggtatacaacattaaaacaaaggagcacgcataattaaatcaaaacacagtttacaattaaccttaccatttgacaaagggat |
39485487 |
T |
|
| Q |
229 |
caactattaccttatgagatcctccttatgtcagaggctttggttattcaagctgagaagcttaaggaaattgttgacaccttttccaactgctctggac |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39485488 |
caactattaccttatgagatcctccttatgtcagaggctttggttattcaagctgagaagcttaaggaaattgttgacaccttttccaactgctctggac |
39485587 |
T |
|
| Q |
329 |
aatgtagctcgaaggtttccttgaaatattactttggtgcttacccgttaacccatatgtaatctaatctgaagctgaattagattcgacgttaatgata |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39485588 |
aatgtagctcgaaggtttccttgaaatattactttggtgcttaccagttaacccatatgtaatctaatctgaagctgaattagattcgacgttaatgata |
39485687 |
T |
|
| Q |
429 |
tacaatcataatcaattagattagattgacacacaagaataagaaaggaatctgacttgtgtaaaacaaataaaagttggtataataaatcagtaaggag |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39485688 |
tacaatcataatcaattagattagattgacacacaagaataagaaaggaatctgaattgtgtaaaacaaataaaagttggtataataaatcagtaaggag |
39485787 |
T |
|
| Q |
529 |
tataat |
534 |
Q |
| |
|
|||||| |
|
|
| T |
39485788 |
tataat |
39485793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 237 - 531
Target Start/End: Original strand, 39478301 - 39478590
Alignment:
| Q |
237 |
accttatgagatcctccttatgtcagaggctttggttattcaagctgagaagcttaaggaaattgttgacaccttttccaactgctctggacaatgtagc |
336 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
39478301 |
acctgatgagatcctccttatttcagaggctttggttagtcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctctggacaatgtggc |
39478400 |
T |
|
| Q |
337 |
tcgaaggtttccttga---aatattactttggtgcttacccgttaacccatatgtaatctaatctgaagctgaattagattcgacgttaatgatatacaa |
433 |
Q |
| |
|
||||||| |||||| | |||||| |||||||||||| |||| | ||||||||||| || ||| || | |||| | ||| |||||||| || |
|
|
| T |
39478401 |
tcgaaggcaaccttgaattattattacattggtgcttacctgtta--caatatgtaatctcat------ctgcatcaaattcaaagtttatgatatataa |
39478492 |
T |
|
| Q |
434 |
tcataatcaattagattagattgacacacaagaataagaaaggaatctgacttgtgtaaaacaaataaaagttggtataataaatcagtaaggagtat |
531 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
39478493 |
ttattatcaattagattagattgacacacaagaataagaatggaatgtgacttgtgtaaaacaaatataagttcatatgataaatcagtaaggagtat |
39478590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 237 - 531
Target Start/End: Original strand, 39474328 - 39474618
Alignment:
| Q |
237 |
accttatgagatcctccttatgtcagaggctttggttattcaagctgagaagcttaaggaaattgttgacaccttttccaactgctctggacaatgta-- |
334 |
Q |
| |
|
|||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| | |
|
|
| T |
39474328 |
acctgatgagttcctcctcatgtcagaggctttggttactcaagctgagaagcttaaggaaattgttgacaccttttgcgactgctctggataatgaatg |
39474427 |
T |
|
| Q |
335 |
--gctcgaaggtttccttgaaatattactttggtgcttacccgttaacccatatgtaatctaatctgaagctgaattagattcgacgttaatgatataca |
432 |
Q |
| |
|
|| ||||| |||||||| |||||| |||||||||||| |||| | ||||||||||| ||||| | | |||||| | ||| |||||||| | |
|
|
| T |
39474428 |
tggcctgaaggcatccttgaattattacattggtgcttacctgtta--caatatgtaatctcatctgcatc------agattcaaagtttatgatatata |
39474519 |
T |
|
| Q |
433 |
atcataatcaattagattagattgacacacaagaataagaaaggaatctgacttgtgtaaaacaaataaaagttggtataataaatcagtaaggagtat |
531 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
39474520 |
actattatcaattagattagattgacacacaagaataagaatggaatgtgacttgtgtaaaacaaatacaagttcatatgataaatcagtaaggagtat |
39474618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 678 times since January 2019
Visitors: 6696