View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0906_low_8 (Length: 541)
Name: NF0906_low_8
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_8 |
 | |
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| [»] scaffold0242 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 127 - 486
Target Start/End: Original strand, 39379761 - 39380119
Alignment:
| Q |
127 |
tcagcagcaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatactcataaacattatcagggtattcagttatgagtgtgaag |
226 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
39379761 |
tcagcaacaagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatactg-taatcattatcagggtattcagttatgagtgtgaag |
39379859 |
T |
|
| Q |
227 |
tgttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaa |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39379860 |
tgttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaa |
39379959 |
T |
|
| Q |
327 |
gtagagattttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcgctgattgttaacgatt |
426 |
Q |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39379960 |
gtagagattttacaggaagtaacgaaaggatctcggtgagaagatcgtcggagaaaaacagcggcgacggagttgtagtcatcgctgattgttaacgatt |
39380059 |
T |
|
| Q |
427 |
tccaatgccaatgcaccttcgccggagtgttatattgaaccgttgaaattgtgaaatgag |
486 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
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|
| T |
39380060 |
tccaatgccaatgcaccttcgccggagtgatatattgaactgttgaaagtgtgaaatgag |
39380119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 52926083 - 52926218
Alignment:
| Q |
1 |
tcatcagcatttactctggtgattgcggagcggtgagcacgatcctcaacttcaatagcaagttgaacaagaccaccttcgagagtggaaatgcagggtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52926083 |
tcatcagcatttactctggtgattgcggagcggtgagcacgatcttcaacttcaatagcaagttgaacaagaccaccttcaagagtggaaatgcagggtg |
52926182 |
T |
|
| Q |
101 |
gagcgggagcatcctgtgggttggtttcagcagcaa |
136 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| |
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| T |
52926183 |
gaacgggagcatcctgtgggttggtttcagcagcaa |
52926218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 211 - 419
Target Start/End: Complemental strand, 3564992 - 3564787
Alignment:
| Q |
211 |
agttatgagtgtgaagtgttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgctt |
310 |
Q |
| |
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|||||| |||||||||| ||| |||| |||||||| ||||| ||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
3564992 |
agttattagtgtgaagtattg---attttgtgattttgatttcatgagatggaatttcacaaaattgggatcggaaatgagagtgttccaaggattactt |
3564896 |
T |
|
| Q |
311 |
acacatttgaatcgaagtagagattttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcg |
410 |
Q |
| |
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||||||||||| ||||| || ||||||||||||||||| || |||||| || ||| ||||| |||||||||||| ||||||| ||| |||| ||| | |
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| T |
3564895 |
acacatttgaaacgaagaagtgattttacaggaagtaacgagaggatcacggcgaggagatcatcggagaagaacgccggcgatggacgagtagacatgg |
3564796 |
T |
|
| Q |
411 |
ctgattgtt |
419 |
Q |
| |
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||||||||| |
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|
| T |
3564795 |
ctgattgtt |
3564787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 234 - 419
Target Start/End: Complemental strand, 3556954 - 3556769
Alignment:
| Q |
234 |
gatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagaga |
333 |
Q |
| |
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||||| |||||||| || |||||| || ||||| |||||||||||||| ||||| |||| ||||||| || ||||| ||| | |||||||||||||| |
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| T |
3556954 |
gattttgtgattttgatctcttgagatggaatttcacaaaattgggatcagaaattagagcgttccaagacttacttacgcatctaaatcgaagtagaga |
3556855 |
T |
|
| Q |
334 |
ttttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacggagttgtagtcatcgctgattgtt |
419 |
Q |
| |
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||| |||| ||||||||||||||||| | ||| ||||| |||||||||||||||||||||||| | |||| ||| |||||||||| |
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| T |
3556854 |
tttcacagaaagtaatgaaaggatctcgacgaggagatcatcggagaagaacaccggcgacggaatcgtagacatggctgattgtt |
3556769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 229 - 384
Target Start/End: Original strand, 3573456 - 3573610
Alignment:
| Q |
229 |
ttgtggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagt |
328 |
Q |
| |
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|||||||||| |||||||| ||||||||| | ||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
3573456 |
ttgtggattttgtgattttgatttcttgagatagaatttcatgaaattgggatcggaaatgagagtgttccaaggattacttacacatttgaaacgaaga |
3573555 |
T |
|
| Q |
329 |
agagattttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaa |
384 |
Q |
| |
|
|| ||||| ||||||||||||||||||| | | ||||| |||||||| |||||||| |
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|
| T |
3573556 |
agtgatttcacaggaagtaatgaaaggaac-tagtgaggagatcgtcagagaagaa |
3573610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 234 - 397
Target Start/End: Original strand, 1687154 - 1687317
Alignment:
| Q |
234 |
gatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagaga |
333 |
Q |
| |
|
||||| |||||||| || |||||| || ||||| |||||| |||||| ||||| |||| ||||||| || ||||| ||| |||||||||| ||||| |
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| T |
1687154 |
gattttgtgattttgatctcttgagatggaatttcacaaaaaagggatcagaaattagagcgttccaagacttacttacgcatctgaatcgaaggagaga |
1687253 |
T |
|
| Q |
334 |
ttttacaggaagtaatgaaaggatcttggtgagaagatcgtcggagaagaacaccggcgacgga |
397 |
Q |
| |
|
||| |||| ||||||||||||||||| | ||| ||||| || ||||||||||||||||||||| |
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|
| T |
1687254 |
tttcacagaaagtaatgaaaggatctcgacgaggagatcatcagagaagaacaccggcgacgga |
1687317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 3573320 - 3573374
Alignment:
| Q |
134 |
caagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatact |
188 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |||||| |||||||||||||| |
|
|
| T |
3573320 |
caagggtaaacgaagggttatcaagtaaacgagatataggatatggaatgatact |
3573374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 3557094 - 3557042
Alignment:
| Q |
135 |
aagggtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatac |
187 |
Q |
| |
|
||||||||| || ||||||||||||| ||| |||||||||||||||||||||| |
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|
| T |
3557094 |
aagggtaaaggacgggttatcgagtaaacggggtatagggtatggaatgatac |
3557042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 353
Target Start/End: Original strand, 3561795 - 3561915
Alignment:
| Q |
233 |
ggatttcgtgattttaatttcttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagag |
332 |
Q |
| |
|
|||||||||| | || ||||||||| ||| ||||| || || ||||| ||||||||||| |||||| || ||||||||||||||||||| ||||| |
|
|
| T |
3561795 |
ggatttcgtgttgttgatttcttgaggtgtaatttcacgaaggaaggatccgaaatgagagtgttccaatatttacttacacatttgaatcgaattagag |
3561894 |
T |
|
| Q |
333 |
attttacaggaagtaatgaaa |
353 |
Q |
| |
|
|||||| |||||||| |||| |
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|
| T |
3561895 |
attttatgggaagtaacgaaa |
3561915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 3565108 - 3565059
Alignment:
| Q |
139 |
gtaaacgaagggttatcgagtatacgaggtatagggtatggaatgatact |
188 |
Q |
| |
|
||||| || ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
3565108 |
gtaaatgacgggttatcgagtaaacgaggtataggatatggaatgatact |
3565059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 14556 - 14656
Alignment:
| Q |
254 |
ttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagagattttacaggaagtaatgaaa |
353 |
Q |
| |
|
|||| ||| ||||| |||||| ||||||| || || || |||||||||| ||| | |||||||||||||||| |||||||| || ||||| || |||| |
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|
| T |
14556 |
ttgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaagagatttcacgggaaggaaggaaa |
14655 |
T |
|
| Q |
354 |
g |
354 |
Q |
| |
|
| |
|
|
| T |
14656 |
g |
14656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 354
Target Start/End: Original strand, 23391 - 23491
Alignment:
| Q |
254 |
ttgaagtgaaatttgacaaaattgggatcggaaatgagagttttccaaggattgcttacacatttgaatcgaagtagagattttacaggaagtaatgaaa |
353 |
Q |
| |
|
|||| ||| ||||| |||||| ||||||| || || || |||||||||| ||| | |||||||||||||||| |||||||| || ||||| || |||| |
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|
| T |
23391 |
ttgaggtgtaatttcacaaaagtgggatcagatattagggttttccaagccttgttaacacatttgaatcgaacaagagatttcacgggaaggaaggaaa |
23490 |
T |
|
| Q |
354 |
g |
354 |
Q |
| |
|
| |
|
|
| T |
23491 |
g |
23491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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