View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0906_low_9 (Length: 532)
Name: NF0906_low_9
Description: NF0906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0906_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 29 - 416
Target Start/End: Complemental strand, 41248592 - 41248205
Alignment:
| Q |
29 |
atgaccaatcacacaaatatttatataaatccaaatttcgtagcaatttaacctaatctattgaaatcattggatgatgtattgagtagttttaaaattt |
128 |
Q |
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| T |
41248592 |
atgaccaatcacacaaatatttatataaatccaaatttcgtagcaatttaacctaatctattgaaatcattggatgatgtattgagtagttttaaaattt |
41248493 |
T |
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| Q |
129 |
tataaaaatttgtggagttggtactctcaataagaacttttgtatgtgtgtgaggctacatttgtctaactataaatgtcattttgaatcaaacatactt |
228 |
Q |
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| T |
41248492 |
tataaaaatttgtggagttggtactctcaataagaacttttgtatgtgtgtgaggctacatttgtctaattataaatgtcattttgaatcaaacatactt |
41248393 |
T |
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| Q |
229 |
cctnnnnnnntattagttagttgaattcaatagttaattatgtattcatcaccatccattaagtggttgaaaagagtgaaatgnnnnnnnnaatgataaa |
328 |
Q |
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| T |
41248392 |
cctaaaaaaatattagttagttgaattcaatagttaaatatgtattcatcaccatccattaagtggttgaaaagagtgaaatgttttttttaatgacaaa |
41248293 |
T |
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| Q |
329 |
tgatagtaagttaattaattatgttagttttttgtttgtcaagatttgaaattggacttttcctcaactcctttaatatcttggttca |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41248292 |
tgatagtaaattaattaattatgttagttttttgtttgtcaagacttgaaattggacttttcctcaactccattaatatcttggttca |
41248205 |
T |
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