View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_high_1 (Length: 487)
Name: NF0907_high_1
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 74 - 474
Target Start/End: Original strand, 43553893 - 43554293
Alignment:
| Q |
74 |
agaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtacc |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553893 |
agaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtacc |
43553992 |
T |
|
| Q |
174 |
attggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43553993 |
attggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatgat |
43554092 |
T |
|
| Q |
274 |
gcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaa |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43554093 |
gcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagcaa |
43554192 |
T |
|
| Q |
374 |
catttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttgaga |
473 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43554193 |
catttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttgaga |
43554292 |
T |
|
| Q |
474 |
a |
474 |
Q |
| |
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| T |
43554293 |
a |
43554293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 72 - 471
Target Start/End: Original strand, 43549890 - 43550289
Alignment:
| Q |
72 |
tcagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgta |
171 |
Q |
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||||| ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | ||||| ||| |||||| |
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| T |
43549890 |
tcagagctcacataaacttctcaccttatggcgaccgcctgaaactgcgagatgtaagacagtgttgccatatttatcttgtctgtgcactagatttgta |
43549989 |
T |
|
| Q |
172 |
ccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctcttgttagataatgaaatg |
271 |
Q |
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|||| || |||| |||||||||||| ||||| ||||| |||||||||||||| |||| ||||| ||| ||||||||||||||||| |||| ||||| |
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| T |
43549990 |
ccataggcaactctcaccaagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctcttcttctcttgtgggatagtgaaagt |
43550089 |
T |
|
| Q |
272 |
atgcagcacttcctgacacaaaatcatcgaggatcgagacttttccgttcattactgcaaggtgcaatggtgtataaccattgttgttgtattgtaaagc |
371 |
Q |
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| |||| |||| || |||||||| || ||| | |||||||| || || || |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43550090 |
acgcagtacttactaccacaaaatagtcaagggttgagactttccccttaatcactgcaagatgcaatggtgtataaccattgttgttgtattgtaaagc |
43550189 |
T |
|
| Q |
372 |
aacatttgaatcgcgttttagtaggatccatacagtctctctgtgtcctttattacaagcatgatgcaatgccgaattcccattctcgtcgatcacttga |
471 |
Q |
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|| ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||| | |||||| |||||||||||||||||| |
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| T |
43550190 |
aagttttgaatcgcgacttagtaggatccatacaatctcaaagtgtcctttataacaagcatgatgcaatgctgtattccctttctcgtcgatcacttga |
43550289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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