View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0907_high_11 (Length: 251)
Name: NF0907_high_11
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_high_11 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 45238228 - 45238449
Alignment:
| Q |
30 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaattgacacatcatagaaaagtgaggaactgagttggaatttactc |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45238228 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaattgacacatcatagaaaagtgaggaactgagttggaatttactc |
45238327 |
T |
|
| Q |
130 |
ctaaataacagaatcagttttttagctaaattaaaagcgttttctaattataaggatccacatggaaactgtcaaactaaagtggcaaattttaaatttg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45238328 |
ctaaataacagaatcagttttttagctaaattaaaagcgttttctaattataaggatccacatggaaactgtcaaactaaagtggcaaattttaaatttg |
45238427 |
T |
|
| Q |
230 |
gttacagaataaaactttggac |
251 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45238428 |
gttacagaataaaactttggac |
45238449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 7831247 - 7831461
Alignment:
| Q |
30 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaattgacacatcatagaaaagtgaggaactgagttgg-aatttact |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||||||||||||| | |||||| |||||||| |
|
|
| T |
7831247 |
aaactttctgcaaagtgagagaccagcttaacattttataatagtgggaaacggaattgacacaatatagaaaagtgaggaaataagttgggaatttact |
7831346 |
T |
|
| Q |
129 |
cctaaataacagaatcagt-tttttagctaaattaaaagcgttttctaattataaggatccacatggaaactgtcaaactaaagtggcaaattttaaatt |
227 |
Q |
| |
|
||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | |
|
|
| T |
7831347 |
cctaaataatggaatcagtgtttttggctaaattaaaagcgttttctaattataaggatccacatggaaactgtcgaacaaaagtggcaaattttaaact |
7831446 |
T |
|
| Q |
228 |
tggttacagaataaa |
242 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
7831447 |
tggttacagaataaa |
7831461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 2632261 - 2632202
Alignment:
| Q |
30 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaattga |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2632261 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaattga |
2632202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 7751 - 7808
Alignment:
| Q |
30 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaatt |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7751 |
aaactttctgcaaagtgagagaccagcttaacattttatgatagtaggaaactgaatt |
7808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 274 times since January 2019
Visitors: 6714