View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0907_high_5 (Length: 310)
Name: NF0907_high_5
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 51351123 - 51351006
Alignment:
| Q |
161 |
gagaaacttcagccacaactgtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgggt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
51351123 |
gagaaacttcagccacaactgtggaaaacaaagttgtttgcatgtcacaaaagctttgttcttctacgcttcga--tatacttgcttgcacttggt-ggt |
51351027 |
T |
|
| Q |
261 |
ggtgaaatcaaaggctgtgtt |
281 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
51351026 |
ggtgaaatcaaaggctgtgtt |
51351006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 51351231 - 51351131
Alignment:
| Q |
9 |
agcagagaacagaattgctaaaatcgcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattcaat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51351231 |
agcagacaacagaattgctaaaatcgcatttaacagacacaaaatcacttcccatagtttccattagtaaaagcacacattaaatcacttgtgattcaat |
51351132 |
T |
|
| Q |
109 |
c |
109 |
Q |
| |
|
| |
|
|
| T |
51351131 |
c |
51351131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 51360494 - 51360375
Alignment:
| Q |
161 |
gagaaacttcagccacaact--gtggaaaacagagttgtttgcatgtcacaaaagctttgttcttctacgcttcgatatatacttgcttgcacttggtgg |
258 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
51360494 |
gagaaacttcagccagaactatgtggaaaaaagagttgtttacatggcacaaaagctttactcttctacgcttc--aatatacttgcttgcacttggt-g |
51360398 |
T |
|
| Q |
259 |
gtggtgaaatcaaaggctgtgtt |
281 |
Q |
| |
|
|||||| ||||| ||| |||||| |
|
|
| T |
51360397 |
gtggtggaatcagaggttgtgtt |
51360375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 148
Target Start/End: Complemental strand, 40020304 - 40020263
Alignment:
| Q |
107 |
atctataactactctttatatcaactccataaaagagatttg |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40020304 |
atctataactactctttatatcaactccataaaagagatttg |
40020263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 758 times since January 2019
Visitors: 6696