View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_high_6 (Length: 293)
Name: NF0907_high_6
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 50989041 - 50988775
Alignment:
| Q |
28 |
cagataatgatttctttgactttttgtgcacattagaatacatgttttgagagaaagggtgtatatgatccacatgaaatggtgtacattgtcgatacat |
127 |
Q |
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| T |
50989041 |
cagatagtgatttctttgactttttgtgcaccttggaatacatgttttgagagaaagggtgtacatgatccacatgaaatggtgtacgttgtctatacat |
50988942 |
T |
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| Q |
128 |
gtt---gnnnnnnnatgttcaaatatcaatac---nnnnnnnnatatcaccatcattaatatattgtacaacaaggatatttaaacattttaaattttca |
221 |
Q |
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| T |
50988941 |
gttgtcgtttttttatgttcaaatatcaatactctttttttttatatca-catcattaatatattgtacaacaaggatatttaaacattttaaattttca |
50988843 |
T |
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| Q |
222 |
taccttt--nnnnnnntcatatgtctattcaacaccttattttctctctatctttcttttcatctcac |
287 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50988842 |
tacctttaaaaaaaaatcatatgtctattcaacaccttattttctctctatctttcttttcatatcac |
50988775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 28 - 287
Target Start/End: Complemental strand, 51092173 - 51091906
Alignment:
| Q |
28 |
cagataatgatttctttgactttttgtgcacattagaatacatgttttgagagaaagggtgtatatgatccacatgaaatggtgtacattgtcgatacat |
127 |
Q |
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| T |
51092173 |
cagatagtgatttctttgactttttgtgcaccttggaatacatgttttgagagaaagggtgtacatgatccacatgaaatggtgtacgttgtctatacat |
51092074 |
T |
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| Q |
128 |
gtt---gnnnnnnnatgttcaaatatcaatac---nnnnnnnnatatcaccatcattaatatattgtacaacaaggatatttaaacattttaaattttca |
221 |
Q |
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| T |
51092073 |
gttgtcgtttttttatgttcaaatatcaatactctttttttttatatca-catcattaatatattgtacaacaaggatatttaaacattttaaattttca |
51091975 |
T |
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| Q |
222 |
taccttt---nnnnnnntcatatgtctattcaacaccttattttctctctatctttcttttcatctcac |
287 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51091974 |
tacctttaaaaaaaaaatcatatgtctattcaacaccttattttctctctatctttcttttcatatcac |
51091906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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