View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_high_7 (Length: 285)
Name: NF0907_high_7
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 74 - 253
Target Start/End: Original strand, 43553893 - 43554072
Alignment:
| Q |
74 |
agaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtacc |
173 |
Q |
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| T |
43553893 |
agaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgtacc |
43553992 |
T |
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| Q |
174 |
attggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcatctc |
253 |
Q |
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| T |
43553993 |
attggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcttctc |
43554072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 72 - 253
Target Start/End: Original strand, 43549890 - 43550071
Alignment:
| Q |
72 |
tcagaactcccatcaatttctcaccttatggcgaccgcctgaaactgcaagatgtaagacactgttgccatatctatcttggcagtgcaataggtttgta |
171 |
Q |
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||||| ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||| | ||||| ||| |||||| |
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| T |
43549890 |
tcagagctcacataaacttctcaccttatggcgaccgcctgaaactgcgagatgtaagacagtgttgccatatttatcttgtctgtgcactagatttgta |
43549989 |
T |
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| Q |
172 |
ccattggaaacttgcaccaagaaaaccaaagcatcatagcatccatatctcacggctaaatgaaataccgtctcttcatctc |
253 |
Q |
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| T |
43549990 |
ccataggcaactctcaccaagaaaactaaagcgtcataacatccatatctcacagctagatgaagtactgtctcttcttctc |
43550071 |
T |
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