View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0907_low_15 (Length: 269)

Name: NF0907_low_15
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0907_low_15
NF0907_low_15
[»] chr1 (5 HSPs)
chr1 (1-158)||(26628760-26628917)
chr1 (149-258)||(26628634-26628743)
chr1 (149-213)||(31684043-31684108)
chr1 (149-202)||(29982653-29982707)
chr1 (114-150)||(29982732-29982768)
[»] chr2 (4 HSPs)
chr2 (149-256)||(41645394-41645501)
chr2 (105-158)||(41645519-41645572)
chr2 (149-211)||(41481218-41481280)
chr2 (112-151)||(41481154-41481193)
[»] chr4 (3 HSPs)
chr4 (156-256)||(12103399-12103501)
chr4 (112-150)||(3788752-3788790)
chr4 (107-158)||(12103525-12103577)
[»] chr6 (2 HSPs)
chr6 (153-245)||(30912771-30912862)
chr6 (149-213)||(11749663-11749728)
[»] chr8 (1 HSPs)
chr8 (183-254)||(10878533-10878604)
[»] chr5 (1 HSPs)
chr5 (112-158)||(36948649-36948695)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 26628917 - 26628760
Alignment:
Q  1 ttttcttatataaatgcactgcatattgaattataaagcacatttttgcgactgcatacattttgaaagctcattttttcgctcaccatttattcacaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26628917 ttttcttatataaatgcactgcatattgaattataaagcacatttttgtgactgcatacattttgaaagctcattttttcgctcaccatttattcacaca 26628818  T
Q  101 cattggtgtaatagtttgttattaatccataatcatgtttagtagagttaagtttgtt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26628817 cattggtgtaatagtttgttattaatccataatcatgtttagtagagttaagtttgtt 26628760  T

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Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 149 - 258
Target Start/End: Complemental strand, 26628743 - 26628634
Alignment:
Q  149 taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaacttccc 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  26628743 taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattaattaatcaatgaacataacaactttcc 26628644  T
Q  249 aatactctct 258  Q
    ||||||||||    
T  26628643 aatactctct 26628634  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 31684043 - 31684108
Alignment:
Q  149 taagtttgttagttagttacataagacttgcactctaagttatgtatataaatatt-ttgtaactc 213  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||||||||||| |||||||||    
T  31684043 taagtttgttagtttgttacaagtgacttgcactctaagtcatgtatataaatattcttgtaactc 31684108  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 29982707 - 29982653
Alignment:
Q  149 taagtttgttagttagttacat-aagacttgcactctaagttatgtatataaata 202  Q
    |||||||||||||||| ||||| ||||||||  ||||||||||||||||||||||    
T  29982707 taagtttgttagttagctacatgaagacttgttctctaagttatgtatataaata 29982653  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 29982768 - 29982732
Alignment:
Q  114 gtttgttattaatccataatcatgtttagtagagtta 150  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  29982768 gtttgttattgatccataatcaagtttagtagagtta 29982732  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 149 - 256
Target Start/End: Complemental strand, 41645501 - 41645394
Alignment:
Q  149 taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaacttccc 248  Q
    |||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||| ||  |||||||||| ||||||||||| |||||  |    
T  41645501 taagtttgttagttagttacaagagactcgcactctaagtcatgtatataaatattttgtaacttctttattcattaattaatgaacataataacttttc 41645402  T
Q  249 aatactct 256  Q
    ||||||||    
T  41645401 aatactct 41645394  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 41645572 - 41645519
Alignment:
Q  105 ggtgtaatagtttgttattaatccataatcatgtttagtagagttaagtttgtt 158  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  41645572 ggtgtattagtttgttattaatccataaccatgtttagtagagttaagtgtgtt 41645519  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 41481218 - 41481280
Alignment:
Q  149 taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaac 211  Q
    ||||||||||||||||||||||||||||||  |||||||| || |||||||||| | ||||||    
T  41481218 taagtttgttagttagttacataagacttgttctctaagtcatatatataaatactatgtaac 41481280  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 151
Target Start/End: Original strand, 41481154 - 41481193
Alignment:
Q  112 tagtttgttattaatccataatcatgtttagtagagttaa 151  Q
    |||||| ||||||||||||||| |||||||||||||||||    
T  41481154 tagtttcttattaatccataataatgtttagtagagttaa 41481193  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 12103501 - 12103399
Alignment:
Q  156 gttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaa--cataacaacttcccaatac 253  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| ||||||  | ||| |||| | ||||||||||   |||||||||| |||||||    
T  12103501 gttagttagttacataagatttgctctctaagttatgtatataaatactttgtagtttctctattcgtcaatcaatgaaacaataacaactttccaatac 12103402  T
Q  254 tct 256  Q
    |||    
T  12103401 tct 12103399  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 3788790 - 3788752
Alignment:
Q  112 tagtttgttattaatccataatcatgtttagtagagtta 150  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3788790 tagtttgttattaatccataatcatgtttagtagagtta 3788752  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 12103577 - 12103525
Alignment:
Q  107 tgtaatagtttgttattaatcca-taatcatgtttagtagagttaagtttgtt 158  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| ||||||    
T  12103577 tgtattagtttgttattaatccaataatcatgtttagtagagttaattttgtt 12103525  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 153 - 245
Target Start/End: Complemental strand, 30912862 - 30912771
Alignment:
Q  153 tttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaactt 245  Q
    ||||||||||||| |||   ||||||||| |||||| |||||||||||  | |||||||| ||| ||||||||||||||||| ||||||||||    
T  30912862 tttgttagttagtaacaagtgacttgcaccctaagtcatgtatataaac-tcttgtaacttctctattcattaatcaatgaagataacaactt 30912771  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Complemental strand, 11749728 - 11749663
Alignment:
Q  149 taagtttgttagttagttacataagacttgcactctaagttatgtatataaatatt-ttgtaactc 213  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||||||||||| |||||||||    
T  11749728 taagtttgttagtttgttacaagtgacttgcactctaagtcatgtatataaatattcttgtaactc 11749663  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 10878604 - 10878533
Alignment:
Q  183 ctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaacttcccaatact 254  Q
    |||||||||||||||||||| | |||||   ||| |||||| |||||||||| |||||||||| ||||||||    
T  10878604 ctaagttatgtatataaatactatgtaaactctctattcatcaatcaatgaaaataacaactttccaatact 10878533  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 36948649 - 36948695
Alignment:
Q  112 tagtttgttattaatccataatcatgtttagtagagttaagtttgtt 158  Q
    |||||||| ||||||||||||| ||||||  ||||||||||||||||    
T  36948649 tagtttgtgattaatccataattatgtttcctagagttaagtttgtt 36948695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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