View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_low_16 (Length: 260)
Name: NF0907_low_16
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 9012567 - 9012790
Alignment:
| Q |
10 |
gcagagagtgtagtggatttggatgccatgatgcaaagtaagtatcgcaaattatgtctttgtggttttgatgtgatgagaagcttattagaagggttag |
109 |
Q |
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| T |
9012567 |
gcagagagggtactggatttggatgccatgatgcaaagtaagtatcgcaaactatgtctttgtggttttgatgtgatgagaagcttattagaagagttca |
9012666 |
T |
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| Q |
110 |
ttatatagaaaatatttgagttaatgcaaatgtgttc-ttagaaaaaaggatcgaaatatctttatgaatatggattaaaaatttgaaacgacgtgagaa |
208 |
Q |
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| T |
9012667 |
ttatatagaaaatatttgtgttaatgcaaatgtgttctttaggaaaaaggatcgaaatatctttatgaatatggattaaaaatttgaaacgacgtgagaa |
9012766 |
T |
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| Q |
209 |
aaaatattacaccgattgatttgt |
232 |
Q |
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| T |
9012767 |
aaaatattacaccgattgatttgt |
9012790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 9020584 - 9020791
Alignment:
| Q |
25 |
gatttggatgccatgatgcaaagtaagtatcgcaaattatgtctttgtggttttgatgtgatgagaagcttattagaagggttagttatatagaaaatat |
124 |
Q |
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| T |
9020584 |
gatttggatgttatggtacaaagtaagtatcgcaaactatgcctata-ggttttgatatgatgagaagcttatcagaagggttaattatatagaaaatat |
9020682 |
T |
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| Q |
125 |
ttgagttaatgcaaatgtgttcttagaaaaaaggatcgaaatatctttatgaatatggattaaaaatttgaaacgacgtgagaaaaaatattacaccgat |
224 |
Q |
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| T |
9020683 |
ttgagtcaatgcaaatatgttctttaggataaggatcgaaatatctttatgaatatggattaaaaatttgaaacgatgttagaaaaaatattacaccgat |
9020782 |
T |
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| Q |
225 |
tgatttgtg |
233 |
Q |
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| T |
9020783 |
tgatttgtg |
9020791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 1744082 - 1744030
Alignment:
| Q |
88 |
agaagcttattagaagggttagttatatagaaaatatttgagttaatgcaaat |
140 |
Q |
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| T |
1744082 |
agaagcttataagaagggttatttatttagaaaattgttgagttaatgcaaat |
1744030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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