View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_low_18 (Length: 250)
Name: NF0907_low_18
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_low_18 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 45239050 - 45238812
Alignment:
| Q |
11 |
gatgaagacaacatttgttttgcatttaacagagtgagtataaagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaagnnnnnnntca |
110 |
Q |
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| T |
45239050 |
gatgaagacaacatttgttttgcatttaacagagtgagtataaagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaa-aaaaaaatca |
45238952 |
T |
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| Q |
111 |
tcaaattcacaaacaatacccagcattaagaaagttacacccaattaaccttctacaaagcactaattcattttgcaataaaatgtcactttctattatg |
210 |
Q |
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| T |
45238951 |
tcaaattcacaaacaatacccagcattaagaaagttacacccaattaaccttctacaaagcactaattcattttgcaataaaatgtcactttctattatg |
45238852 |
T |
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| Q |
211 |
tgcatgttaattttatttacagcatagacggaccacaatc |
250 |
Q |
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| T |
45238851 |
tgcatgttaattttatttacagcatagacggaccacaatc |
45238812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 7832071 - 7831844
Alignment:
| Q |
14 |
gaagacaacatttgttttgcatttaacagagtgagtataaagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaagnnnnnnntcatca |
113 |
Q |
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| T |
7832071 |
gaagaccacatttgttatgcatttaacagagc----atagagctcagagtgcatcaagtgctttgaggtgtacctgtatgaagaaa----caaattatca |
7831980 |
T |
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| Q |
114 |
aattcacaaacaatacccagcattaagaaagttacacccaattaaccttctacaaagcactaattcattttgcaataaaatgtcactttctattatgtgc |
213 |
Q |
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| T |
7831979 |
aattcacaaacgatacccagcatgacgaaagtaacactcaattaaccttctacagtgcaccaattcattttgcaataaaatgtctctttctattatgtac |
7831880 |
T |
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| Q |
214 |
atgttaattttatttacagcatagacggaccacaatc |
250 |
Q |
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| T |
7831879 |
atgttta-tttatttacagcatagacggtccacaatc |
7831844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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