View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_low_19 (Length: 239)
Name: NF0907_low_19
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47299358 - 47299461
Alignment:
| Q |
1 |
tagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaa |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47299358 |
tagagaagcagtatctttttccttaattgtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaga |
47299457 |
T |
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| Q |
101 |
atct |
104 |
Q |
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|||| |
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| T |
47299458 |
atct |
47299461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 47292751 - 47292854
Alignment:
| Q |
1 |
tagagaagcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaa |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
47292751 |
tagagaagcagtatcttcttccttaatggtatttggcgaaaaaatttgtttgtattcaagatggttgcatgtaatgcgtggagggtctcttgccattaga |
47292850 |
T |
|
| Q |
101 |
atct |
104 |
Q |
| |
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|||| |
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| T |
47292851 |
atct |
47292854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 47267487 - 47267394
Alignment:
| Q |
11 |
gtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatct |
104 |
Q |
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||||||| |||||| || ||||||| ||||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
47267487 |
gtatcttcttccttgattgtatttgacgaaaaaatttgttcgtattcatgatggttgcatgtaatgtgtggtgggtctcttgccattagaatct |
47267394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 47242559 - 47242483
Alignment:
| Q |
28 |
ggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatct |
104 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
47242559 |
ggtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatgtatggagggtctcttgccattagaatct |
47242483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 47278854 - 47278769
Alignment:
| Q |
13 |
atctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
98 |
Q |
| |
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||||| |||||| || |||||| |||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |
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| T |
47278854 |
atcttcttccttgttgatatttgacgaaagtatttgttcgtattcatgatggttgcaagtaacacgtggagggtctcttgccatta |
47278769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 47256686 - 47256611
Alignment:
| Q |
29 |
gtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatct |
104 |
Q |
| |
|
|||||||||| ||| |||||||| |||||| ||||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
47256686 |
gtatttggcggaagtatttgttcatattcacgatggttgcaagtaatgtatggagggtctcttgccattagaatct |
47256611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 47283453 - 47283362
Alignment:
| Q |
7 |
agcagtatctttttccttaatggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccatta |
98 |
Q |
| |
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||||| ||||| |||||| || |||||| || ||| |||||||| |||||| ||||||||| |||||||||||||||||||| ||||||| |
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| T |
47283453 |
agcagcatcttcttccttgttgatatttgacgtaagtatttgttcatattcacgatggttgcaagtaatgcgtggagggtctctagccatta |
47283362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 32731230 - 32731154
Alignment:
| Q |
28 |
ggtatttggcgaaagaatttgttcgtattcaaaatggttgcatgtaatgcgtggagggtctcttgccattaaaatct |
104 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
32731230 |
ggtatttggcgaaagtatttgttcgtattcacgatggttgcatgtaatacatggagggtctcttgccattagaatct |
32731154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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