View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0907_low_4 (Length: 347)

Name: NF0907_low_4
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0907_low_4
NF0907_low_4
[»] chr3 (2 HSPs)
chr3 (98-265)||(52163844-52164011)
chr3 (147-203)||(42171847-42171903)
[»] chr1 (2 HSPs)
chr1 (98-265)||(6634949-6635116)
chr1 (228-265)||(40207484-40207521)
[»] chr5 (2 HSPs)
chr5 (148-265)||(15964232-15964349)
chr5 (115-265)||(7266270-7266420)
[»] chr8 (1 HSPs)
chr8 (163-259)||(33346683-33346779)
[»] chr6 (1 HSPs)
chr6 (157-263)||(2498502-2498608)
[»] chr4 (1 HSPs)
chr4 (157-263)||(27101090-27101196)
[»] chr7 (1 HSPs)
chr7 (153-207)||(37500754-37500808)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 52163844 - 52164011
Alignment:
Q  98 catagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggacc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52163844 catagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggacc 52163943  T
Q  198 gggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgat 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52163944 gggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgat 52164011  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 42171903 - 42171847
Alignment:
Q  147 tctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatg 203  Q
    ||||| |||||| || |||||||||||||||||||| | |||||| ||||| |||||    
T  42171903 tctaagccaaggcttccctttcccactccaatgcaaaagactcaccggaccaggatg 42171847  T

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Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 265
Target Start/End: Original strand, 6634949 - 6635116
Alignment:
Q  98 catagggtgcccaaagtgcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggacc 197  Q
    |||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||    
T  6634949 cataaggtgcccaaagagcatccaaaggacaaggtctattagcatccaatctcacccatggtttaccttttccactccaatgcaataaactcactggacc 6635048  T
Q  198 gggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgat 265  Q
     |||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  6635049 aggatgaagatctctacaaagacctcgaaaattatcaccaccaagaccatgttgattccatctatgat 6635116  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 40207521 - 40207484
Alignment:
Q  228 attatcaccaccaagtccatgttgattccacctatgat 265  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  40207521 attatcacctccaagtccgtgttgattccacctatgat 40207484  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 148 - 265
Target Start/End: Original strand, 15964232 - 15964349
Alignment:
Q  148 ctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccat 247  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| | |  |||||||| ||||   ||||||||||||||||||||||    
T  15964232 ctaacccaaggttttccttttccactccaatgcaataaactaacaggaccaggatgcaaagatctacaaacaccattcaaattatcaccaccaagtccat 15964331  T
Q  248 gttgattccacctatgat 265  Q
    |||||||||| |||||||    
T  15964332 gttgattccatctatgat 15964349  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 265
Target Start/End: Original strand, 7266270 - 7266420
Alignment:
Q  115 gcatccaaaggacaaggcctactagcatccaatctaacccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctac 214  Q
    |||||||| |||||||| | | ||||||| |  ||  |||| |||||||| |||||||||||||| |  |||||||| || || ||||| | ||  | ||    
T  7266270 gcatccaacggacaaggacgattagcatcaagcctggcccacggtttacccttcccactccaatgaagtaaactcaccgggcccggatgcaaatcccgac 7266369  T
Q  215 aaagaccacgaaaattatcaccaccaagtccatgttgattccacctatgat 265  Q
    |||| ||| | ||||||||||| ||||| |||||||||||||||| |||||    
T  7266370 aaagcccatggaaattatcaccgccaagcccatgttgattccaccgatgat 7266420  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 259
Target Start/End: Complemental strand, 33346779 - 33346683
Alignment:
Q  163 cctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattccacc 259  Q
    ||||| ||||||||||||||||||||||| || || ||||| | ||  | |||||| ||||||||||||||||| || || ||||| ||||||||||    
T  33346779 ccttttccactccaatgcaacaaactcaccgggcctggatgcaaatcccgacaaagcccacgaaaattatcaccgccgagcccatgctgattccacc 33346683  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 2498502 - 2498608
Alignment:
Q  157 ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc 256  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | ||||||||  | ||  || ||||||||||||||| |||||||||||||    
T  2498502 ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc 2498601  T
Q  257 acctatg 263  Q
    | |||||    
T  2498602 atctatg 2498608  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 157 - 263
Target Start/End: Original strand, 27101090 - 27101196
Alignment:
Q  157 ggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaagatttctacaaagaccacgaaaattatcaccaccaagtccatgttgattcc 256  Q
    ||||| ||||| ||||||||||| |||||||| || ||||| ||||| | | ||||||||  | ||  || ||||||||||||||| |||||||||||||    
T  27101090 ggtttccctttaccactccaatgtaacaaactaactggaccaggatgcaaacttctacaactatcaacaacattatcaccaccaagaccatgttgattcc 27101189  T
Q  257 acctatg 263  Q
    | |||||    
T  27101190 atctatg 27101196  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 37500754 - 37500808
Alignment:
Q  153 ccaaggtttacctttcccactccaatgcaacaaactcacaggaccgggatgaaga 207  Q
    |||||||||||| |||||||||||||| | |||||| ||||| || |||||||||    
T  37500754 ccaaggtttacccttcccactccaatgaagcaaactaacaggcccaggatgaaga 37500808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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