View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0907_low_5 (Length: 340)
Name: NF0907_low_5
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 129 - 330
Target Start/End: Complemental strand, 5419952 - 5419751
Alignment:
| Q |
129 |
caggccagtagtggaacaaagttgtatatatagatggagtatatatggagaagaaattaattaagggcattttggctttcccttagagttcttcatgtcc |
228 |
Q |
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| T |
5419952 |
caggccagtagtggaacaaagttgtatatatagatggagtatatatggagaagaaattaattaagggcattttggctttcccttagagttcttcatgtcc |
5419853 |
T |
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| Q |
229 |
ctataacaagggcactcatgtttgttcccataagttcctgatggcacacacttacatttaccgcaacatatcccacaaaacttcatgcatctgtccttca |
328 |
Q |
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| T |
5419852 |
ctataacaagggcactcatgtttgttcccataagttcctgatggcacacacttacatttaccgcaacatatcccacaaaacttcatgcatctgtccttca |
5419753 |
T |
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| Q |
329 |
tc |
330 |
Q |
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|| |
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| T |
5419752 |
tc |
5419751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 5420049 - 5419994
Alignment:
| Q |
30 |
accaattatctttcacaatactatatgacacaaagattaatcagctaagaagagta |
85 |
Q |
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| T |
5420049 |
accaattatctttcacaatactatatgacacaaagattaatcagctaagaagagta |
5419994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 325
Target Start/End: Original strand, 47311741 - 47311879
Alignment:
| Q |
187 |
aattaagggcattttggctttcccttagagttcttcatgtccctataacaagggcactcatgtttgttcccataagttcctgatggcacacacttacatt |
286 |
Q |
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| T |
47311741 |
aattaagggcattttcctttgccctttgaattcttcatgtctctgtaacaaggacactcatctttgttgccataagtcccagatggtacacagttacatt |
47311840 |
T |
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| Q |
287 |
taccgcaacatatcccacaaaacttcatgcatctgtcct |
325 |
Q |
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| T |
47311841 |
tctcacaacatatcccacaaaacttcaagcatctgtcct |
47311879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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