View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0907_low_6 (Length: 338)
Name: NF0907_low_6
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0907_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 32 - 335
Target Start/End: Complemental strand, 40573435 - 40573135
Alignment:
| Q |
32 |
catcccatgctaataaacgttaacgtctatgccatttccaaggctccccataccaaaagactcatttttaaaattgacaccaattttttctcagtgaact |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40573435 |
catcccatgctaataaacgttaacgtctatgccatttccaaggctccccatcccaaaagactcatttttaaaattgacaccaattttttctcagtgaact |
40573336 |
T |
|
| Q |
132 |
caataagacgtcttaaactatattttaggactcgctctccaaccaagggtcccacccaaaagaagttgaggatccatcacctatggaacgatctaaatta |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40573335 |
caataagacgtcttaaactatattttaggactcgctctccaaccaagggtccca-ccaaaaaaagttgaggacccatcacctatggaacgatctaaatta |
40573237 |
T |
|
| Q |
232 |
tccaaaaaacccattctctaccgcctaaacatggcccttcacaaatactagataaattttgtcacaaaatagaacataatctaccgccacacctatgata |
331 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||| |
|
|
| T |
40573236 |
tccaaaaa--ccattctctaccgcctcaacatggcccttcacaaatactagatagattttgtcacaaaatagaacatagtctactgccacacctttgatc |
40573139 |
T |
|
| Q |
332 |
ctac |
335 |
Q |
| |
|
|||| |
|
|
| T |
40573138 |
ctac |
40573135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 38424458 - 38424562
Alignment:
| Q |
84 |
ccaaaagactcatttttaaaattgacaccaattttttctcagtgaactcaataagacgtcttaaactatattttaggact-cgctctccaaccaagggtc |
182 |
Q |
| |
|
|||||||||| || | ||||| ||||||||||| ||||||| ||||||| ||||||| | || |||| ||||| |||| | | ||||||||| ||||| |
|
|
| T |
38424458 |
ccaaaagacttatatctaaaacggacaccaatttgttctcagataactcaaaaagacgtatgaatctatcttttaagactccaccctccaaccaggggtc |
38424557 |
T |
|
| Q |
183 |
ccacc |
187 |
Q |
| |
|
||||| |
|
|
| T |
38424558 |
ccacc |
38424562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 781 times since January 2019
Visitors: 6705