View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0907_low_8 (Length: 318)

Name: NF0907_low_8
Description: NF0907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0907_low_8
NF0907_low_8
[»] scaffold0041 (2 HSPs)
scaffold0041 (97-288)||(87592-87783)
scaffold0041 (97-288)||(95608-95799)
[»] chr7 (2 HSPs)
chr7 (97-288)||(40870483-40870674)
chr7 (97-288)||(40878500-40878691)
[»] chr4 (1 HSPs)
chr4 (219-273)||(21715642-21715696)
[»] chr2 (1 HSPs)
chr2 (219-284)||(40352712-40352777)
[»] chr1 (1 HSPs)
chr1 (220-284)||(42730140-42730204)


Alignment Details
Target: scaffold0041 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 87592 - 87783
Alignment:
Q  97 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87592 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 87691  T
Q  197 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  87692 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 87783  T

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Target: scaffold0041; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 288
Target Start/End: Original strand, 95608 - 95799
Alignment:
Q  97 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95608 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 95707  T
Q  197 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  95708 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 95799  T

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Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 40870674 - 40870483
Alignment:
Q  97 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870674 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 40870575  T
Q  197 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40870574 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 40870483  T

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Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 40878691 - 40878500
Alignment:
Q  97 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878691 aatcatgagaccgatgaagtgtatgcaaaactcagacttgtccctatgaatattaaccaggttagttttgataatgatggtgttgctggcatcaacgtgt 40878592  T
Q  197 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40878591 ccgaaacaaaggataaacatcaatcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagatattgt 40878500  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 21715642 - 21715696
Alignment:
Q  219 atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttct 273  Q
    ||||||||| || || ||||| ||||||||||||||||||||||| || ||||||    
T  21715642 atcttttgctaagactttgactcaatctgatgcaaacaatggtggggggttttct 21715696  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 40352777 - 40352712
Alignment:
Q  219 atcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagata 284  Q
    ||||||||| || || |||||||| |||||||||||||||||||| || || |||  |||||||||    
T  40352777 atcttttgcaaagactttgacacagtctgatgcaaacaatggtggagggttctctgttcctagata 40352712  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 42730140 - 42730204
Alignment:
Q  220 tcttttgcgaaaaccttgacacaatctgatgcaaacaatggtggtggcttttcttgtcctagata 284  Q
    |||||||| || || || |||||||||||||||||||| ||||| || ||||||  |||||||||    
T  42730140 tcttttgcaaagacattaacacaatctgatgcaaacaacggtggaggtttttctgttcctagata 42730204  T

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