View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_110 (Length: 213)
Name: NF0908_high_110
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_110 |
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Alignment Details
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 48666466 - 48666397
Alignment:
| Q |
18 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtggt |
87 |
Q |
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| T |
48666466 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtggt |
48666397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 48628223 - 48628155
Alignment:
| Q |
18 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
86 |
Q |
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||||||| ||||||||||||||||| |||| ||| |||| ||| |||||||||||||| |||||||| |
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| T |
48628223 |
agcagaggagttgaagaaaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggtgg |
48628155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 48584640 - 48584572
Alignment:
| Q |
18 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggtgg |
86 |
Q |
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|||||||| ||||||| ||||||||| ||||| ||| ||| |||||||||||| |||| |||||||| |
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| T |
48584640 |
agcagagaagttgaagcaaaatgcaaacaagtggaagaagaaggcggaggaagctttggccgttggtgg |
48584572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 48655890 - 48655834
Alignment:
| Q |
18 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagt |
74 |
Q |
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||||||| ||||||||||||||||| ||||| ||| ||||| |||||||| ||||| |
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| T |
48655890 |
agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagt |
48655834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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