View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_high_12 (Length: 502)

Name: NF0908_high_12
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_high_12
NF0908_high_12
[»] chr6 (11 HSPs)
chr6 (74-204)||(13929393-13929523)
chr6 (74-204)||(14043583-14043713)
chr6 (419-484)||(13474814-13474879)
chr6 (245-301)||(13475232-13475288)
chr6 (85-199)||(13885032-13885147)
chr6 (252-301)||(14081789-14081838)
chr6 (419-484)||(14082786-14082851)
chr6 (419-462)||(13898039-13898082)
chr6 (309-353)||(14081904-14081948)
chr6 (422-467)||(13894977-13895022)
chr6 (451-484)||(14020729-14020762)
[»] chr8 (4 HSPs)
chr8 (245-301)||(10507392-10507448)
chr8 (299-353)||(8754138-8754192)
chr8 (245-301)||(8753980-8754036)
chr8 (299-352)||(10507236-10507289)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 13929393 - 13929523
Alignment:
Q  74 acaaacaaattgaattgtgtcgggggtacactatcaggtctccaaaacaaacatttattgacaaaataggaatcggtgtattcaaacaaggaatcaacgt 173  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13929393 acaaacaaattgaattgtgtcgggggttcactatcaggtctccgaaacaaacatttattgacaaaataggaatcggtgtattcaaacaaggaatcaacgt 13929492  T
Q  174 ggagggcatccgattcaccactccacattat 204  Q
    |||| ||||||||||||||||||||||||||    
T  13929493 ggagagcatccgattcaccactccacattat 13929523  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 14043583 - 14043713
Alignment:
Q  74 acaaacaaattgaattgtgtcgggggtacactatcaggtctccaaaacaaacatttattgacaaaataggaatcggtgtattcaaacaaggaatcaacgt 173  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14043583 acaaacaaattgaattgtgtcgggggtacactatcaggtctcggaaacaaacatttattgacaaaataggaatcggtgtattcaaacaaggaatcaacgt 14043682  T
Q  174 ggagggcatccgattcaccactccacattat 204  Q
    |||| ||||||||||||||||||||||||||    
T  14043683 ggagagcatccgattcaccactccacattat 14043713  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 484
Target Start/End: Complemental strand, 13474879 - 13474814
Alignment:
Q  419 cattcaagacattcttcctgttctttctgtcattcctgaggtaagtctatgttactgaacaatttt 484  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||| |||||    
T  13474879 cattcaagacattcttcttgttctttctgtcattcctgaggtaaaactatgttactgaaccatttt 13474814  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 13475288 - 13475232
Alignment:
Q  245 tgaaactggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 301  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13475288 tgaaaccggaacttctgtatgttatttaaaatgcatgtgaaagcccactaagcttta 13475232  T

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Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 13885147 - 13885032
Alignment:
Q  85 gaattgtgtcgggggtacactatcaggtctccaaaacaaacattt-attgacaaaataggaatcggtgtattcaaacaaggaatcaacgtggagggcatc 183  Q
    ||||||||| | | ||||| |||| || ||||||||||||| ||| ||||| ||||||||| || || ||||||||| |||||||||| |||||| ||||    
T  13885147 gaattgtgtggtgtgtacattatctggcctccaaaacaaactttttattgataaaataggagtcagtttattcaaaccaggaatcaacatggaggacatc 13885048  T
Q  184 cgattcaccactccac 199  Q
    |||||||||| |||||    
T  13885047 cgattcaccaatccac 13885032  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 14081789 - 14081838
Alignment:
Q  252 ggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 301  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14081789 ggaacttctgtatgttatttacaatgcatgtgaaagccctctaagcttta 14081838  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 484
Target Start/End: Original strand, 14082786 - 14082851
Alignment:
Q  419 cattcaagacattcttcctgttctttctgtcattcctgaggtaagtctatgttactgaacaatttt 484  Q
    |||| ||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||    
T  14082786 catttaagacattcttcctgttctttctctcattcctgtggtaaatctatgttactgaaccatttt 14082851  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 419 - 462
Target Start/End: Complemental strand, 13898082 - 13898039
Alignment:
Q  419 cattcaagacattcttcctgttctttctgtcattcctgaggtaa 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  13898082 cattcaagacattcttcctgttctttctgtcattcctgaggtaa 13898039  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 14081904 - 14081948
Alignment:
Q  309 aaattcagtgaagtcatgtttctgttgatgaacgagttctcactg 353  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||    
T  14081904 aaattcaatgaagtcatgtttctgttgatgaatgagttctcactg 14081948  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 422 - 467
Target Start/End: Complemental strand, 13895022 - 13894977
Alignment:
Q  422 tcaagacattcttcctgttctttctgtcattcctgaggtaagtcta 467  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||    
T  13895022 tcaagacattcttcccgttctttctgccattcctgaggtaaatcta 13894977  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 451 - 484
Target Start/End: Original strand, 14020729 - 14020762
Alignment:
Q  451 ttcctgaggtaagtctatgttactgaacaatttt 484  Q
    ||||||||||||||||||||||||||||||||||    
T  14020729 ttcctgaggtaagtctatgttactgaacaatttt 14020762  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 10507448 - 10507392
Alignment:
Q  245 tgaaactggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 301  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10507448 tgaaactgaaacttcagtatgttatttacaatgcatgtgaaagcccactaagcttta 10507392  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 8754138 - 8754192
Alignment:
Q  299 ttacagtaaaaaattcagtgaagtcatgtttctgttgatgaacgagttctcactg 353  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||||| |||||    
T  8754138 ttacagcaaaaaattcagtgaagtcatgtttttgttgatgaatgagttcccactg 8754192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 8753980 - 8754036
Alignment:
Q  245 tgaaactggaacttctgtatgttatttacaatgcatgtgaaagcccactaagcttta 301  Q
    |||||||| |||||| |||||||||||||||||||| |||| |||||||||| ||||    
T  8753980 tgaaactgaaacttcagtatgttatttacaatgcatatgaatgcccactaagtttta 8754036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 10507289 - 10507236
Alignment:
Q  299 ttacagtaaaaaattcagtgaagtcatgtttctgttgatgaacgagttctcact 352  Q
    |||||||||||||||||||||| ||||||||  ||||||||| |||||| ||||    
T  10507289 ttacagtaaaaaattcagtgaaatcatgttttcgttgatgaatgagttcccact 10507236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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