View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_high_13 (Length: 480)

Name: NF0908_high_13
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_high_13
NF0908_high_13
[»] chr3 (3 HSPs)
chr3 (276-476)||(53534844-53535042)
chr3 (276-308)||(53533654-53533686)
chr3 (276-308)||(53536951-53536983)
[»] chr1 (3 HSPs)
chr1 (276-476)||(4753423-4753621)
chr1 (303-476)||(38202432-38202604)
chr1 (276-308)||(4756677-4756709)
[»] chr8 (2 HSPs)
chr8 (276-476)||(42915883-42916081)
chr8 (276-308)||(42919146-42919178)
[»] chr7 (3 HSPs)
chr7 (279-476)||(23252770-23252965)
chr7 (276-467)||(21944680-21944868)
chr7 (276-308)||(23255547-23255579)
[»] chr5 (4 HSPs)
chr5 (276-476)||(19598759-19598957)
chr5 (124-277)||(16052321-16052471)
chr5 (295-398)||(13951464-13951564)
chr5 (231-270)||(42564264-42564303)
[»] chr4 (3 HSPs)
chr4 (280-476)||(13096238-13096431)
chr4 (276-476)||(17382371-17382568)
chr4 (271-332)||(25063602-25063663)
[»] chr2 (1 HSPs)
chr2 (353-476)||(41543723-41543845)
[»] chr6 (1 HSPs)
chr6 (6-53)||(2844628-2844677)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 276 - 476
Target Start/End: Complemental strand, 53535042 - 53534844
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 375  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  53535042 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 53534946  T
Q  376 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 474  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  53534945 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatggttccttctctc 53534846  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 53533686 - 53533654
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttg 308  Q
    |||||||||||||||||||||||||||||||||    
T  53533686 tactccctccgtcccacaatgtaagtcgctttg 53533654  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 53536983 - 53536951
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttg 308  Q
    ||||||||||||||||||| |||||||||||||    
T  53536983 tactccctccgtcccacaaggtaagtcgctttg 53536951  T

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Target: chr1 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 276 - 476
Target Start/End: Original strand, 4753423 - 4753621
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 375  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  4753423 tactccctccgtcccacaatgtaagtcgctttgacacttttacgtatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgtgtt 4753519  T
Q  376 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 474  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  4753520 ttcctcttttacccttggcaacacaattactccaacttaattgccaccatcccacattcctccaactccaaggcaatgaattcatatgattccttctctc 4753619  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 303 - 476
Target Start/End: Complemental strand, 38202604 - 38202432
Alignment:
Q  303 gctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtttt-cctcttttacctttggcaacacaa 401  Q
    ||||||||| |||||| ||||||||||||||   ||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||    
T  38202604 gctttgacacttttacacatattaagaaata---tttaacttttgtgaactttgttaaaattagatatgtttttttcctcttttacccttggcaacacaa 38202508  T
Q  402 ttactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctctc 476  Q
    |||||||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||    
T  38202507 ttactccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttccttctctctc 38202432  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 4756709 - 4756677
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttg 308  Q
    |||||||||||||||||||||||||||||||||    
T  4756709 tactccctccgtcccacaatgtaagtcgctttg 4756677  T

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Target: chr8 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 276 - 476
Target Start/End: Original strand, 42915883 - 42916081
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 375  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||||||||||||||||    
T  42915883 tactccctccgtcccacaatgtaagtcgctttgacacttttacgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgtt 42915979  T
Q  376 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 474  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| || ||||||||    
T  42915980 ttcctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattcatatgattccttctctc 42916079  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 42919178 - 42919146
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttg 308  Q
    |||||||||||||||||||| ||||||||||||    
T  42919178 tactccctccgtcccacaatataagtcgctttg 42919146  T

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Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 279 - 476
Target Start/End: Original strand, 23252770 - 23252965
Alignment:
Q  279 tccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttc 378  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||    
T  23252770 tccctccgtcccacaatgtaagtcgctttgacattttttcgcatattaagaaata---tttaacttttatgaactttgttaaaattaaatatgtgttttc 23252866  T
Q  379 ctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctctc 476  Q
    |||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| || ||||||||||    
T  23252867 ctcttttacccttggcaacacaattactccaacttaattgccaccgtcccacattcctccaactccaaggcaatgaattcatatgattccttctctctc 23252965  T

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Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 276 - 467
Target Start/End: Original strand, 21944680 - 21944868
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 375  Q
    |||||| ||||| ||| | |||| || |||||| || ||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  21944680 tactccttccgttccaaattgtacgttgctttggcacttttacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 21944776  T
Q  376 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggttc 467  Q
    ||||||||||| | |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||||||||||| |||||    
T  21944777 ttcctcttttatccttggcaacacaattactccaacttgattgtcaccgtcccaaattcctccaactccaaggcaatgaattcacacggttc 21944868  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 23255579 - 23255547
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttg 308  Q
    |||||||||||||||||||||||||||||||||    
T  23255579 tactccctccgtcccacaatgtaagtcgctttg 23255547  T

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Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 276 - 476
Target Start/End: Original strand, 19598759 - 19598957
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 375  Q
    |||||||||||||||| | | || | ||||||| || || |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||    
T  19598759 tactccctccgtcccaaattatatgccgctttggcacttctacgcatattaagaaatc---tttaacttttgtgaactttgttaaaattaaatatgtttt 19598855  T
Q  376 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 474  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||  ||||| ||||||| ||||||||||||||||||||||| |||| ||||||||    
T  19598856 ttcctcttttacccttggcaacacaattactccaacttgattgccaccgtcccaaattcctcaaactccaaggcaatgaattcacacggttccttctctc 19598955  T

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Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 16052471 - 16052321
Alignment:
Q  124 aatgaaagtctatgtgtgatttctccttggtcgtatagaaaaacgcatnnnnnnntgagataagaattaattagagtaaagtttgtagtagtatttcctt 223  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||       || |||||||||||||||||||||| |||||||||   |||||||    
T  16052471 aatgaaagtctatgtgtgatttcaccttggtcgtataggaaaacgcataaaaaaatgtgataagaattaattagagtaaaatttgtagta---tttcctt 16052375  T
Q  224 tttgcctcaattatgcagtaatcacccacttattgcttgtattagcttatacta 277  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  16052374 tttgcctcaattatgcagtaatcaaccacttattgcttgtattagcttatacta 16052321  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 13951464 - 13951564
Alignment:
Q  295 tgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcctcttttacctttggc 394  Q
    |||| |||||||||||| ||||||| ||||||||||||    | |||||||||| |||||||| |||| ||||||| | ||| ||||||||||| ||| |    
T  13951464 tgtatgtcgctttgacacttttacgtatattaagaaatc---tctaacttttgtaaactttgtcaaaagtaaatatatttttccctcttttacccttgac 13951560  T
Q  395 aaca 398  Q
    ||||    
T  13951561 aaca 13951564  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 270
Target Start/End: Complemental strand, 42564303 - 42564264
Alignment:
Q  231 caattatgcagtaatcacccacttattgcttgtattagct 270  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  42564303 caattatgcagtaatcaccaatttattgcttgtattagct 42564264  T

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Target: chr4 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 280 - 476
Target Start/End: Complemental strand, 13096431 - 13096238
Alignment:
Q  280 ccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgttttcc 379  Q
    |||||||||||| | |||| |||||||||||| |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||    
T  13096431 ccctccgtcccaaattgtatgtcgctttgacacttttacgcatattaagaaata---tttaacttttgtgaactttgttaaaattaaatatgttttttcc 13096335  T
Q  380 tcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctctc 476  Q
    ||||||||| |||||||||||||||| ||||||| ||||||||  | ||| ||||||||||||| |||| | |||||||||| |||| ||||||||||    
T  13096334 tcttttacccttggcaacacaattaccccaacttgattgccaccgt-ccaaattcctccaactctaaggaattgaattcacacggttccttctctctc 13096238  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 276 - 476
Target Start/End: Complemental strand, 17382568 - 17382371
Alignment:
Q  276 tactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaatagtatttaacttttgtgaactttgttaaaattaaatatgtgtt 375  Q
    |||||||||||| ||| | |||| ||||||||| || |||||| |||||||||||||    ||||||||||||||||||||||||||||| |||||| ||    
T  17382568 tactccctccgttccaaattgtacgtcgctttggcacttttacacatattaagaaatc---tttaacttttgtgaactttgttaaaattagatatgt-tt 17382473  T
Q  376 ttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaatgaattcacatggtt-cttctctc 474  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||||||  ||||| ||||||||||||||||||||||||||||||| |||| ||||||||    
T  17382472 ttcctcttttacccttggcaacacaattattccaacttgattgccaccgtcccaaattcctccaactccaaggcaatgaattcacacggttccttctctc 17382373  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 25063602 - 25063663
Alignment:
Q  271 tatactactccctccgtcccacaatgtaagtcgctttgacatttttacgcatattaagaaat 332  Q
    ||||||||||||||||||||| | |||||| || |||| || ||| || |||||||||||||    
T  25063602 tatactactccctccgtcccaaattgtaagacgttttggcaatttcacacatattaagaaat 25063663  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 353 - 476
Target Start/End: Original strand, 41543723 - 41543845
Alignment:
Q  353 tttgttaaaattaaatatgtgttttcctcttttacctttggcaacacaattactccaacttaattgccacaatcccacattcctccaactccaaggcaat 452  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| |||  ||||| ||||||||||||||||||||||    
T  41543723 tttgtgaaaattaaatatgt-ttttcctcttttacccttggcaacacaattactccaacttgattg-caccgtcccaaattcctccaactccaaggcaat 41543820  T
Q  453 gaattcacatggtt-cttctctctc 476  Q
    ||||||||| |||| ||||||||||    
T  41543821 gaattcacacggttccttctctctc 41543845  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 2844677 - 2844628
Alignment:
Q  6 atgaacatgattgtggctata--agtgaccctaattgtttccatgcgtgc 53  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  2844677 atgaacatgattgtggctatataagtgaccctaattgtttccatgcgtgc 2844628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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