View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_14 (Length: 478)
Name: NF0908_high_14
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 30 - 440
Target Start/End: Original strand, 53044922 - 53045332
Alignment:
| Q |
30 |
tccagttggtaaggtattgtcctttacagtccaaaactaaatcaatggaaactaaaggggccataataagactatgttagagattttttctagcgatcaa |
129 |
Q |
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| T |
53044922 |
tccagttggtaaggtattgtcctttacagtccaaaactaaatcaatggaaactaaaggggccataataagactatgttagagattttttctagcgattaa |
53045021 |
T |
|
| Q |
130 |
gttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggtatataaccttatttaaggattgaaaaagatattctgagtagcgtcctt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
53045022 |
gttaggagccagtcaactgtaaaatgatttatttctcctactagtgataggtatataacctcatttaaggattgaaaaagctattctgagtagcgtcctt |
53045121 |
T |
|
| Q |
230 |
ttggcttggtattccaattaagtttctcacattctacaacataaggatttaaggattcaaaatctcttgagaaatttcaaaagacatgttctgtacttat |
329 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045122 |
ttggcttggtattccaattaattttctcacattctacaacataaggatttaaggattcaaaatctcttgagaaatttcaaaagacatgttctgtacttat |
53045221 |
T |
|
| Q |
330 |
ccttacttggatggattgattgtgattttaataatagacttcatttccaacattttcttttgcttaattgtttatgttgttgacaagtgttataccataa |
429 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53045222 |
ccttacttggatgaattgattgtgattttaataatagacttcatttccaacattttcttttgcttaattgtttatgttgttgacaagtgttataccataa |
53045321 |
T |
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| Q |
430 |
ctccacaggtt |
440 |
Q |
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|| | |||||| |
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| T |
53045322 |
cttctcaggtt |
53045332 |
T |
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