View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_24 (Length: 452)
Name: NF0908_high_24
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 102 - 444
Target Start/End: Original strand, 41653385 - 41653732
Alignment:
| Q |
102 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttt |
201 |
Q |
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| T |
41653385 |
atgtggcattggttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaagttgtgacaagcaggtcaagatgtggccacttt |
41653484 |
T |
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| Q |
202 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
301 |
Q |
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| T |
41653485 |
tatctggagggcaaccgacgactgttgccgtgcatgatggtcccatcaaagagattgcatggataccagagatgaatgttttggccacaggaagctggga |
41653584 |
T |
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| Q |
302 |
caaaaccattaagtatgcatattcattctttttatt---------------cgtccaaagagtcttgggtcatttcacaaattattttgtgtttattagg |
386 |
Q |
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| T |
41653585 |
caaaaccattaagcatgcatattcattcttttcattcagttaccgtacgtacgtctaaagagtattgggtc----------ttattttatgtttgttagg |
41653674 |
T |
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| Q |
387 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgct |
444 |
Q |
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| T |
41653675 |
tattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatctctgct |
41653732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 41653347 - 41653381
Alignment:
| Q |
35 |
aatgtatctacattgttgttattgttgtacttaat |
69 |
Q |
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| T |
41653347 |
aatgtatctacattgttgttattgttgtacttaat |
41653381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 113 - 338
Target Start/End: Complemental strand, 28819847 - 28819622
Alignment:
| Q |
113 |
gttgtaggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggaggg |
212 |
Q |
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| T |
28819847 |
gttgaaggttttgtgctcagcttggaaagatgatggaacgacagtgttttctggaggttgtgataagcaggctaagatgtggccgcttttgtctggaggg |
28819748 |
T |
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| Q |
213 |
caaccgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaaaaccatta |
312 |
Q |
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| T |
28819747 |
caaccggtgactgttgctatgcatgatgctcccattaaagagattgcatggataccggagatgagtcttttagccactggaagcttggacaaaactgtaa |
28819648 |
T |
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| Q |
313 |
agtatgcatattcattctttttattc |
338 |
Q |
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| T |
28819647 |
agtatgcaattttattctttttattc |
28819622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 438
Target Start/End: Complemental strand, 28818183 - 28818127
Alignment:
| Q |
382 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccctgatc |
438 |
Q |
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| T |
28818183 |
ttaggtattgggatactaggcaatccaacccagtgcatactcaacaactccctgatc |
28818127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 117 - 304
Target Start/End: Complemental strand, 1464337 - 1464150
Alignment:
| Q |
117 |
taggttttgtgctctgcttggaaggatgatggaacaactgtttttaccggaggttgtgacaagcaggtcaagatgtggccacttttatctggagggcaac |
216 |
Q |
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| T |
1464337 |
taggttttgtgctctgcttggaaggatgatggcacaactgtcttctctggtggatgtgacaagcaagttaaaatgtggcctctgttgtctggaggacaac |
1464238 |
T |
|
| Q |
217 |
cgacgactgttgccgtgcatgatggtcccgtcaaagagattgcatggataccagagatgaatgttttggccacaggaagctgggacaa |
304 |
Q |
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| T |
1464237 |
caattactgtagccatgcacgatgcacctatcaaagatattgcttggattcccgagatgaaccttttagccacaggaagctgggacaa |
1464150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 433
Target Start/End: Complemental strand, 1463665 - 1463614
Alignment:
| Q |
382 |
ttaggtattgggatactaggcagcaaaatccagtgcatactcagcaactccc |
433 |
Q |
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| T |
1463665 |
ttaggtattgggatacaaggcagccaaatccagtgcacacacaacaactccc |
1463614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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