View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_30 (Length: 414)
Name: NF0908_high_30
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 179 - 404
Target Start/End: Complemental strand, 33861992 - 33861770
Alignment:
| Q |
179 |
gatatgtcacctgctaaaattttggtcaagatctgccgcgacaaaattgtccctcgatcaaacaaaagatcaaatcattattttannnnnnngacataaa |
278 |
Q |
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| T |
33861992 |
gatatgtcaccctctaaaattttggtcaagatctgccacgacaaaattgtccctcgatcaaacaaaagaacaaatcattatttt---tttttgacataaa |
33861896 |
T |
|
| Q |
279 |
caactcattatttatcttctatacaatatataaaatacttcatccataatgaaatatcagcaaaacggatagttgaaaaatcaacatataaaaatttagt |
378 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
33861895 |
caactcattatttatcttttatactatatataaaatacttcatccataatgaaatatcaacaaaacggatagttgaaaaatcaacgtataaaaatttagt |
33861796 |
T |
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| Q |
379 |
ctccagacatcaacttctcacctatg |
404 |
Q |
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|| || ||||||||||||||| |||| |
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| T |
33861795 |
ctacatacatcaacttctcacttatg |
33861770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 48666466 - 48666400
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggt |
75 |
Q |
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| T |
48666466 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggt |
48666400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 48628223 - 48628157
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagtggcggttggt |
75 |
Q |
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| T |
48628223 |
agcagaggagttgaagaaaaatgcaatgaagtggaagaaggaggcagaggaagcagtggccgttggt |
48628157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 48655890 - 48655834
Alignment:
| Q |
9 |
agcagagacgttgaagaaaaatgcaaccaagttgaaaaaggcggcggaggaagcagt |
65 |
Q |
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||||||| ||||||||||||||||| ||||| ||| ||||| |||||||| ||||| |
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| T |
48655890 |
agcagaggagttgaagaaaaatgcaatcaagtggaagaaggcagcggaggatgcagt |
48655834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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