View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_54 (Length: 306)
Name: NF0908_high_54
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_54 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 54180891 - 54181114
Alignment:
| Q |
1 |
acaaatcttcccacttcaagagagtgtgacaccttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaagg |
100 |
Q |
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| T |
54180891 |
acaaatcttcccacttcaagagagtgtggcatcttttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaagg |
54180990 |
T |
|
| Q |
101 |
atcgagaattgttggggacagcttcgtaaatacttcatcgacattctcttcaatcaaaggaggggaaactatgggtgcatatgtggctccaatattggta |
200 |
Q |
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| T |
54180991 |
atcgagaattgttggggacagcttcgtaaatacttcatcgacattctcttcaatcaaaggaggggaaactatgggtgcatatgtggctccaatattggta |
54181090 |
T |
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| Q |
201 |
acattgttttgattagtagtagtg |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
54181091 |
acattgttttgattagtagtagtg |
54181114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 41942204 - 41942078
Alignment:
| Q |
35 |
tttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatcgagaattgttggggacagcttcgtaaatact |
134 |
Q |
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| T |
41942204 |
tttcaacaaatcctcattgaatctagcaggaagatcataaacatagatatactgacctaaacaaggatccataatttttggcggcaactttttaaatact |
41942105 |
T |
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| Q |
135 |
tcatcgacattctcttcaatcaaagga |
161 |
Q |
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| T |
41942104 |
tcatcaacattgtgtttaatcaaagga |
41942078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 41947718 - 41947650
Alignment:
| Q |
35 |
tttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatc |
103 |
Q |
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| T |
41947718 |
tttcaacaaatcctcattgaatctagcaggaagatcataaacatagatatattggcctaaacaaggatc |
41947650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 22794218 - 22794153
Alignment:
| Q |
35 |
tttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaagg |
100 |
Q |
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||||||||| || | |||||| | ||||||||||||||| || || |||||| ||||||||||||| |
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| T |
22794218 |
tttcaacaagtcatcattgaatcgactaggaagatcatagacatatatatattggcctaaacaagg |
22794153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 1210472 - 1210404
Alignment:
| Q |
35 |
tttcaacaaatccttattgaacctactaggaagatcataaacgtaaatatatcggcctaaacaaggatc |
103 |
Q |
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||||||||||||| |||||| ||| |||||||||||||| || |||||| ||| |||||||||||| |
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| T |
1210472 |
tttcaacaaatccacattgaatctagcaggaagatcataaatatagatatattggcttaaacaaggatc |
1210404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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