View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_high_59 (Length: 297)

Name: NF0908_high_59
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_high_59
NF0908_high_59
[»] chr7 (8 HSPs)
chr7 (33-179)||(11354957-11355103)
chr7 (33-126)||(9680542-9680636)
chr7 (59-126)||(42222888-42222955)
chr7 (37-126)||(20137578-20137668)
chr7 (227-277)||(11354597-11354647)
chr7 (59-126)||(4296387-4296455)
chr7 (69-126)||(24817851-24817909)
chr7 (66-126)||(9678864-9678924)
[»] chr6 (6 HSPs)
chr6 (37-126)||(3396095-3396185)
chr6 (37-126)||(3390132-3390222)
chr6 (59-122)||(3234179-3234242)
chr6 (37-126)||(32447786-32447875)
chr6 (62-126)||(15719423-15719488)
chr6 (94-130)||(12162028-12162064)
[»] chr2 (6 HSPs)
chr2 (51-126)||(17848155-17848230)
chr2 (37-125)||(17848812-17848901)
chr2 (59-126)||(45239432-45239500)
chr2 (44-126)||(28196334-28196416)
chr2 (67-126)||(38414507-38414567)
chr2 (67-126)||(31733224-31733284)
[»] chr1 (7 HSPs)
chr1 (37-127)||(50079293-50079384)
chr1 (41-126)||(40133658-40133743)
chr1 (59-126)||(50308010-50308077)
chr1 (49-126)||(11457959-11458036)
chr1 (59-126)||(50077125-50077193)
chr1 (37-126)||(17318612-17318701)
chr1 (59-126)||(12302964-12303032)
[»] scaffold0004 (1 HSPs)
scaffold0004 (42-126)||(79661-79745)
[»] chr8 (6 HSPs)
chr8 (37-126)||(30481007-30481096)
chr8 (38-127)||(5623208-5623295)
chr8 (59-126)||(40878025-40878092)
chr8 (67-126)||(36865331-36865392)
chr8 (59-126)||(35872845-35872913)
chr8 (37-76)||(33032387-33032426)
[»] chr5 (6 HSPs)
chr5 (37-123)||(25903825-25903911)
chr5 (37-126)||(1190065-1190154)
chr5 (59-126)||(16092676-16092744)
chr5 (37-126)||(36208298-36208388)
chr5 (59-126)||(31473082-31473150)
chr5 (37-76)||(11962825-11962864)
[»] chr4 (9 HSPs)
chr4 (37-126)||(12396316-12396405)
chr4 (59-126)||(38928648-38928715)
chr4 (37-126)||(33415935-33416019)
chr4 (66-127)||(19095695-19095757)
chr4 (67-126)||(12401287-12401347)
chr4 (66-126)||(13543808-13543868)
chr4 (67-128)||(37313541-37313602)
chr4 (37-126)||(18537942-18538029)
chr4 (59-126)||(24447046-24447114)
[»] chr3 (10 HSPs)
chr3 (66-127)||(6231168-6231230)
chr3 (59-126)||(3306518-3306586)
chr3 (59-126)||(47149389-47149457)
chr3 (59-123)||(51675225-51675290)
chr3 (37-127)||(54692022-54692112)
chr3 (68-126)||(890249-890308)
chr3 (59-126)||(3314404-3314472)
chr3 (67-126)||(53590911-53590971)
chr3 (43-121)||(880926-881004)
chr3 (94-126)||(23636727-23636759)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 11355103 - 11354957
Alignment:
Q  33 acataaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaacagatatc 132  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  11355103 acataaaatcgtgcttcgatttctccaaatcgggctccgattttgacagcttcagcaaactcaatttcttcaattttgagtcactttcacaacagttatc 11355004  T
Q  133 aatatacaaacaaaatgttaaggatcattaaatgtacataatatatt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11355003 aatatacaaacaaaatgttaaggatcattaaatgtacataatatatt 11354957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 9680636 - 9680542
Alignment:
Q  33 acataaaatcgtgctccgatttctccaaatcgggc-tccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  9680636 acataaaatcatgctctgatttctccaaatcgggcctccgattttgacagcttcagcaaacttaatttctccaattttgagtcactttcacaaca 9680542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 42222955 - 42222888
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  42222955 aaatcgtgctccgattttgacagcttcagcaaactcaatttctccaattttaagtcactttcacaaca 42222888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 20137578 - 20137668
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||||| ||||||||| | ||||||| ||||||||| | ||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  20137578 aaaatcgtactccgattttttcaaatcgtgctccgattataacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 20137668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 11354647 - 11354597
Alignment:
Q  227 ttttgtattgtattctgaagcctggcttgacataggttattttgatgatgt 277  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11354647 ttttgtattgtattctgaagcctgccttgacataggttattttgatgatgt 11354597  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 4296387 - 4296455
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||||||| || ||||||||| |||||||||||||||||||||||    
T  4296387 aaatcgtgctccgattttgacagcttcagcaagcttcaatttctccaattttgagtcactttcacaaca 4296455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 24817851 - 24817909
Alignment:
Q  69 ccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    ||||||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||    
T  24817851 ccgattttgacaaattcaacaaacttcaatttctccaattttgagtcactttcacaaca 24817909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 9678924 - 9678864
Alignment:
Q  66 gctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    ||||||||||||||| ||||| || ||| |||||||| |||||||||||| ||||||||||    
T  9678924 gctccgattttgacagcttcaacatacttaatttctccaattttgagtcattttcacaaca 9678864  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 3396185 - 3396095
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||    
T  3396185 aaaatcgtgctccgatttctccaaatcgggcttcgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 3396095  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 3390222 - 3390132
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| |||||||||||||||||||| |||||||||||||||| |||| | |||| |||||||||| |||||||||||||||||||||||    
T  3390222 aaaatcatgctccgatttctccaaatcaggctccgattttgacagcttctgtaaacttcaatttctccaattttgagtcactttcacaaca 3390132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 3234179 - 3234242
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcac 122  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  3234179 aaatcggactccgattttgacagcttcagcaaactcaatttctccaattttgagtcactttcac 3234242  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 32447786 - 32447875
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaactcaa-tttctctaattttgagtcactttcacaaca 126  Q
    |||||| |||||||||||||| ||||||  ||||  |||||||| ||||| |||||| || |||||| |||||||||||||||||||||||    
T  32447786 aaaatcatgctccgatttctc-aaatcgtactccttttttgacagcttcaacaaacttaaatttctccaattttgagtcactttcacaaca 32447875  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 15719488 - 15719423
Alignment:
Q  62 tcgggctccgattttgacaacttcagcaaactc-aatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||  |||||||||||  |||||||| |||||||||||||||||||||||    
T  15719488 tcgggccccgattttgacagattcagcaaactttaatttctccaattttgagtcactttcacaaca 15719423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 12162028 - 12162064
Alignment:
Q  94 caatttctctaattttgagtcactttcacaacagata 130  Q
    |||||||| |||||||||| |||||||||||||||||    
T  12162028 caatttctttaattttgaggcactttcacaacagata 12162064  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 17848230 - 17848155
Alignment:
Q  51 atttctccaaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  17848230 atttctccaaatcgggctccgattttgacagcttcagcaaactcaatttctccaattttgagtcactttcccaaca 17848155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 17848901 - 17848812
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaac 125  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||  |||||||||| |||||||||| ||||||||||||||||||||||    
T  17848901 aaaatcgtgttccgatttttccaaatcgggcttcgattttgacagtttcagcaaacttcaatttctccaattttgagtcactttcacaac 17848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 45239432 - 45239500
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  45239432 aaatcgtgctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 45239500  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 28196416 - 28196334
Alignment:
Q  44 tgctccgatttctccaaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||| ||||||||| ||||||  |||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||||    
T  28196416 tgcttcgatttctc-aaatcgtactccgattttgacagcttcagcaaacttcaatttctccatttttgagtcactttcacaaca 28196334  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 38414507 - 38414567
Alignment:
Q  67 ctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  38414507 ctccaattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 38414567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 31733224 - 31733284
Alignment:
Q  67 ctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||| ||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  31733224 ctccaattttgacagcttcaccaaacttcaatttctccaattttgagtcactttcacaaca 31733284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 50079293 - 50079384
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaacag 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||  ||||| ||||||||||||||||||    
T  50079293 aaaatcgtgctccgatttctccaaatcgggttccgattttgacagcttcagcaaacttcaatttcttcaatttggagtcactttcacaacag 50079384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 40133743 - 40133658
Alignment:
Q  41 tcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||| ||||||||| || |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  40133743 tcgtactccgatttttc-aaatcgtgctccgattttgacagcttcagcaaacttcaatttctctaattttgagtcactttcacaaca 40133658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 50308010 - 50308077
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  50308010 aaatcgtgctccaattttgacagcttcagcaaactcaatttctccaattttgagtcactttcacaaca 50308077  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 126
Target Start/End: Original strand, 11457959 - 11458036
Alignment:
Q  49 cgatttctccaaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||    
T  11457959 cgatttctccaaatcgaactccaattttgacaacttcagcaaactcaaattctccaaatttgagtcaatttcacaaca 11458036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 50077125 - 50077193
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  50077125 aaatcgtgctccgattttgacagcttcaacaaacttcaatttctctaattttgagtcactttcacaaca 50077193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 17318701 - 17318612
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    ||||| ||||| ||||||||| |||||| |||||||| |||| | |||||||||||| |||||||||  ||||||||||||||||||||||    
T  17318701 aaaattgtgcttcgatttctc-aaatcgtgctccgatattgatagcttcagcaaacttcaatttctccgattttgagtcactttcacaaca 17318612  T

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Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 12302964 - 12303032
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| |||||| |||||||||||| |||||||| ||||||||| |||||||| ||||||||||||||    
T  12302964 aaatcgtgctccgcttttgacaactttagcaaacttcaatttctccaattttgaatcactttcacaaca 12303032  T

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Target: scaffold0004 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 79745 - 79661
Alignment:
Q  42 cgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||  ||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  79745 cgtgctccgattttgccagatcgtgctccgattttgacagcttcagcaaactcaatttctccaattttgagtcactttcacaaca 79661  T

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Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 30481007 - 30481096
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||| ||||||||| || |||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  30481007 aaaatcgtactccgatttttc-aaatcgtgctccgattttgacaacttcagcaaacttcaatttctccaattttgagtcactttcacaaca 30481096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 5623208 - 5623295
Alignment:
Q  38 aaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaacag 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||| ||||||||   |||||||||||||    
T  5623208 aaatcgtgctccgatttctccaaatcgggctccgattttgacagcttcagcaaactttaatttctccaattttga---actttcacaacag 5623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 40878025 - 40878092
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  40878025 aaatcgtgctccgattttgacagcttcagcaaactcaatttctccaattttgagtcactttcacaaca 40878092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 36865392 - 36865331
Alignment:
Q  67 ctccgattttgacaacttcagcaaac--tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||||||||||||||   |||||||||| |||||| ||||||||||||||||    
T  36865392 ctccgattttgacaacttcagcaaaacttcaatttctccaattttaagtcactttcacaaca 36865331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 35872845 - 35872913
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||| ||||||||| ||||||||||| ||||||| |  ||||||||||| |||||||||||    
T  35872845 aaatcgtgctccaattttgacagcttcagcaaacttcaatttattcaattttgagtccctttcacaaca 35872913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 33032426 - 33032387
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgatttt 76  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  33032426 aaaatcgtgctccgatttttccagatcgggctccgatttt 33032387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 25903911 - 25903825
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcaca 123  Q
    |||||| ||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||||| |||||||| |||||||||||    
T  25903911 aaaatcatgctccgatttctccaaatcgggctccaattttgatagcttcggcaaactcaatttctccaattttgaatcactttcaca 25903825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 1190065 - 1190154
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||| |||||| |||||| ||||| ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||    
T  1190065 aaaatcgtgctccgttttctc-aaatcgtgctccaattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaaca 1190154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 16092676 - 16092744
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||||    
T  16092676 aaatcgtgctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcagtttcacaaca 16092744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 36208388 - 36208298
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    ||||| || |||| |||| || |||||| ||||||||||||||| ||||||||||| |||||||| | |||||| ||||||||||||||||    
T  36208388 aaaattgtactccaatttttcaaaatcgtgctccgattttgacagcttcagcaaacttcaatttcaccaattttaagtcactttcacaaca 36208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 31473082 - 31473150
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||| |||||| | ||||||||||||||    
T  31473082 aaatcgtgctccgattttgacagcttcagcaaacttcaatttctccaattttaaatcactttcacaaca 31473150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 11962825 - 11962864
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgatttt 76  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  11962825 aaaatcgtgctccgatttttccagatcgggctccgatttt 11962864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 12396316 - 12396405
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||| | |||||||| |||||||||| ||||||||||||    
T  12396316 aaaatcgtactccgatttctc-aaatcgggctccgattttgacagcttcagcaaacttgaatttctccaattttgagtaactttcacaaca 12396405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 38928648 - 38928715
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||    
T  38928648 aaatcgtgctccgattttgacagcttcagcaaactcaatttctccaattttgagtcaatttcacaaca 38928715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 33415935 - 33416019
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaa-ctcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||||||||||||||||||||||| |||||||      |||||||  |||||||||| |||||||||||||||||||||||    
T  33415935 aaaatcgtgctccgatttctccaaatcgggctccaattttga------cagcaaatttcaatttctccaattttgagtcactttcacaaca 33416019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 19095757 - 19095695
Alignment:
Q  66 gctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaacag 127  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||    
T  19095757 gctccgattttgacaacttcagcaaacttcaatttctccaattttaaatcactttcacaacag 19095695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 12401287 - 12401347
Alignment:
Q  67 ctccgattttgacaacttcagcaaactc-aatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||| ||||||||||||  |||||||| |||||||||| ||||||||||||    
T  12401287 ctccgattttgacagcttcagcaaacttgaatttctccaattttgagtaactttcacaaca 12401347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 13543868 - 13543808
Alignment:
Q  66 gctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    ||||||||||||||| ||||| || ||| |||||||| |||||||||||| ||||||||||    
T  13543868 gctccgattttgacagcttcaacatacttaatttctccaattttgagtcattttcacaaca 13543808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 37313541 - 37313602
Alignment:
Q  67 ctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaacaga 128  Q
    |||||||||||||| |||| | ||||| ||||||||| |||||||||||||||||||||||||    
T  37313541 ctccgattttgacagcttc-gtaaacttcaatttctccaattttgagtcactttcacaacaga 37313602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 18537942 - 18538029
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaactcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||| ||||||||| || ||||||   ||||||||||||| |||||| ||  |||||||||  |||||||||||||||||||||||    
T  18537942 aaaatcgtactccgatttttc-aaatcgtattccgattttgacagcttcag-aacttcaatttcttcaattttgagtcactttcacaaca 18538029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 24447046 - 24447114
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||| ||||||||| ||||||||||| ||||||| |  ||||||||||| |||||||||||    
T  24447046 aaatcgtgctccaattttgacagcttcagcaaacttcaatttattcaattttgagtccctttcacaaca 24447114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 6231230 - 6231168
Alignment:
Q  66 gctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaacag 127  Q
    ||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||    
T  6231230 gctccgattttgacagcttcagcaaacttcaatttctccaattttgagtcactttcacaacag 6231168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 3306586 - 3306518
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||||    
T  3306586 aaatcgtgctccgattttgacagctttagcaaacttcaatttctccaattttgagtcactttcacaaca 3306518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 47149389 - 47149457
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||||||||    
T  47149389 aaatcgtgctccgattttgacagcttcatcaaacttcaatttctccaattttgagtcactttcacaaca 47149457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 51675225 - 51675290
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcaca 123  Q
    |||||| ||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||||||    
T  51675225 aaatcgtgctccgattttgacagcttcagaaaacatcaatttctccaattttgagtcactttcaca 51675290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 127
Target Start/End: Original strand, 54692022 - 54692112
Alignment:
Q  37 aaaatcgtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaacag 127  Q
    ||||||||  |||||||| || || ||| ||| |||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||    
T  54692022 aaaatcgtaatccgatttttc-aattcgtgcttcgattttgacaactccagcaaacttcaatttctccaattttaagtcactttcacaacag 54692112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 890249 - 890308
Alignment:
Q  68 tccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    ||||||||||||| ||||| |||||| ||||||||| |||||||||||||||||| ||||    
T  890249 tccgattttgacagcttcaacaaacttcaatttctccaattttgagtcactttcataaca 890308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 3314472 - 3314404
Alignment:
Q  59 aaatcgggctccgattttgacaacttcagcaaact-caatttctctaattttgagtcactttcacaaca 126  Q
    |||||| ||||| ||||||||| ||||| |||||| ||||||||  |||||||| ||||||||||||||    
T  3314472 aaatcgtgctcctattttgacagcttcaacaaacttcaatttcttcaattttgaatcactttcacaaca 3314404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 53590971 - 53590911
Alignment:
Q  67 ctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttcacaaca 126  Q
    |||||||||||||| ||||||||||| |||||||||  |||||||||| | ||||||||||    
T  53590971 ctccgattttgacagcttcagcaaacttcaatttcttcaattttgagttattttcacaaca 53590911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 121
Target Start/End: Original strand, 880926 - 881004
Alignment:
Q  43 gtgctccgatttctccaaatcgggctccgattttgacaacttcagcaaac-tcaatttctctaattttgagtcactttca 121  Q
    |||||| ||||| || ||||||| |||||||||||||| ||||| ||||| |||| |||||  |||||||||||||||||    
T  880926 gtgctctgatttttctaaatcggactccgattttgacagcttcaacaaacttcaacttctc-cattttgagtcactttca 881004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 23636759 - 23636727
Alignment:
Q  94 caatttctctaattttgagtcactttcacaaca 126  Q
    ||||||||| |||||||||||||||||||||||    
T  23636759 caatttctccaattttgagtcactttcacaaca 23636727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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