View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_65 (Length: 285)
Name: NF0908_high_65
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_65 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 35298874 - 35299115
Alignment:
| Q |
16 |
atcaatagctgtctttaatgtgtatggcaaagtcaaatctgccttcatcacacaacaagtcataaaaattggcagaaacaaacttgtcccaaagaattca |
115 |
Q |
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| T |
35298874 |
atcaatagctgcctttaatgtatatggcaaagtaaaatctgccttcatcacacaacaagtcataaatattggcagaagcaaacttgtcccaaagaattca |
35298973 |
T |
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| Q |
116 |
agcttcctaaccaatgcagatcctaatggaggtccttctggcacagctaaccccaaaacatatgcacctaatgcaaactcttggtttatgtaacccgcaa |
215 |
Q |
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| T |
35298974 |
agcttcctaaccaatgcagatcctaatggaggtccttctggcacagctaaccccaaaacatatgcacctaatgcaaactcttggtttatgtaacccgcaa |
35299073 |
T |
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| Q |
216 |
accaacctaaacctaataccattacaatgataccatagatgt |
257 |
Q |
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| T |
35299074 |
accaacctaaacctaataccattacaatgataccatagatgt |
35299115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 257
Target Start/End: Complemental strand, 5622832 - 5622604
Alignment:
| Q |
29 |
tttaatgtgtatggcaaagtcaaatctgccttcatcacacaacaagtcataaaaattggcagaaacaaacttgtcccaaagaattcaagcttcctaacca |
128 |
Q |
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| T |
5622832 |
tttaatgtatatggcaaagacaaatctgccttcatcacacaacaagtcataaatattggcagcaacaaacttgtcccaaagaattcaagcttcctaacta |
5622733 |
T |
|
| Q |
129 |
atgcagatcctaatggaggtccttctggcacagctaaccccaaaacatatgcacctaatgcaaactcttggtttatgtaacccgcaaaccaacctaaacc |
228 |
Q |
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| T |
5622732 |
atgcagatcctaatggaggtccgtctggcacagctaaccccaaaacatatgcacctaatgcaaactcttggtttatgtaacctgcaaaccaacctaaacc |
5622633 |
T |
|
| Q |
229 |
taataccattacaatgataccatagatgt |
257 |
Q |
| |
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| T |
5622632 |
tagtaccattaaaatgataccatagatgt |
5622604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 38382627 - 38382665
Alignment:
| Q |
115 |
aagcttcctaaccaatgcagatcctaatggaggtccttc |
153 |
Q |
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| T |
38382627 |
aagcttcttaaccaatgcagatcctaaaggaggtccttc |
38382665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Original strand, 38391485 - 38391523
Alignment:
| Q |
115 |
aagcttcctaaccaatgcagatcctaatggaggtccttc |
153 |
Q |
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| T |
38391485 |
aagcttcttaaccaatgcagatcctaaaggaggtccttc |
38391523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 38400058 - 38400112
Alignment:
| Q |
99 |
ttgtcccaaagaattcaagcttcctaaccaatgcagatcctaatggaggtccttc |
153 |
Q |
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|||| |||||||| | ||||||| |||||||||||||||||| ||||||||||| |
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| T |
38400058 |
ttgtaccaaagaactgaagcttcttaaccaatgcagatcctagaggaggtccttc |
38400112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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