View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_72 (Length: 267)
Name: NF0908_high_72
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_72 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 4167308 - 4167080
Alignment:
| Q |
30 |
tgtaggcattgcatacagatttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtgcttaagttatcaaaga |
129 |
Q |
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| T |
4167308 |
tgtaggcattgcatacagatttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtgtttaagttatcaaaga |
4167209 |
T |
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| Q |
130 |
ttaatatgttagttaag----nnnnnnnnngttactaacatcagcattcacatattggccattcacaaggagccaaggtgtgtgagtaagaggtggattt |
225 |
Q |
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| T |
4167208 |
ttaatatgttagttaagaaaaaaaaaaaaagttactaacatcagcattcacatattggccattcacaaggagccaaggtgtgtgagtaagaggtggattt |
4167109 |
T |
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| Q |
226 |
agccaatttgtttctctaccattgtgtct |
254 |
Q |
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| T |
4167108 |
agccaatttgtttctctaccattgtgtct |
4167080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 4174277 - 4174212
Alignment:
| Q |
48 |
atttcacgagatcaccaaactgtagaaaagaattaggaatattaataagggagagaaatataagtg |
113 |
Q |
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| T |
4174277 |
atttcactagatcatcaacctgtagaaaagaattaggaatgttaataagggagagaaatttaagtg |
4174212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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