View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_high_86 (Length: 250)
Name: NF0908_high_86
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_86 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 29 - 250
Target Start/End: Original strand, 33153162 - 33153383
Alignment:
| Q |
29 |
caacatattgaagctgttggattcatatgtgcttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtga |
128 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33153162 |
caacatattgaagctgttagattcatatgtgcttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtga |
33153261 |
T |
|
| Q |
129 |
cttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatatatgttttatgaaacaatctatcttcatgcaccatc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33153262 |
cttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcatatatgttttatgaaacaatctatcttcatgcaccatc |
33153361 |
T |
|
| Q |
229 |
gtgttagttataaacaagttga |
250 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
33153362 |
atgttagttataaacaagttga |
33153383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 51576939 - 51577103
Alignment:
| Q |
29 |
caacatattgaagctgttggattcatatgtgcttataacgtggccaacaagaatcaatca---gttgatctcttgcaggaacatgtgcagagtgcaaaag |
125 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||| |||| | ||||||||||||||||| |||||||||||| ||||| ||||||| | ||||||| |
|
|
| T |
51576939 |
caacatgttgaagctgttagattcatttgtgcttgtaacattaccaacaagaatcaatcatccgttgatctcttgtgggaacttgtgcagtgggcaaaag |
51577038 |
T |
|
| Q |
126 |
tgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattca |
190 |
Q |
| |
|
||| || ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
51577039 |
tgatttctgagagcaactgcaagaaaaccaactccattgaaatcaaggttcgtatttcttattca |
51577103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 2363596 - 2363789
Alignment:
| Q |
33 |
atattgaagctgttggattcatatgtgcttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgactta |
132 |
Q |
| |
|
||||||| |||||| ||||||| || || |||||| |||| |||||||||||||||| ||| |||| |||||||||||||| ||||| | || | | |
|
|
| T |
2363596 |
atattgaggctgttagattcatctgcgcatataacacagccactaagaatcaatcagttggtctattgcgggaacatgtgcagaatgcaagatcgattaa |
2363695 |
T |
|
| Q |
133 |
tgagagcaagtgcaagacaaccaactccattgaaataaaggttctcttttcttattcata-tatgttttatgaaacaatctatcttcatgcacc |
225 |
Q |
| |
|
|||||||| |||||| ||||||||||||| ||||| |||||||| ||| |||||||| | ||| |||||||||||| || ||||||||||||| |
|
|
| T |
2363696 |
tgagagcagttgcaaggcaaccaactccatagaaatcaaggttctttttacttattcaaattatattttatgaaacattccatcttcatgcacc |
2363789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 39425281 - 39425098
Alignment:
| Q |
36 |
ttgaagctgttggattcatatgtgcttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatga |
135 |
Q |
| |
|
||||||||||| ||||| ||||| | |||| || |||||| ||||||| |||||||||||||| ||||||||||||| ||||||| ||| || ||| |
|
|
| T |
39425281 |
ttgaagctgtttcattcagttgtgcatttaacttgagcaacaataatcaattagttgatctcttgcgagaacatgtgcagaatgcaaaactgatttctga |
39425182 |
T |
|
| Q |
136 |
gagcaagtgcaagacaaccaactccattgaaataaaggttc-tcttttcttattcatatatgttttatgaaacaatctatcttca |
219 |
Q |
| |
|
||| | |||| || |||||||||||| ||||| ||||||| | |||||||||||| || | |||||||||||| || ||||||| |
|
|
| T |
39425181 |
gagtacttgcatgaaaaccaactccatcgaaattaaggttctttttttcttattca-atttattttatgaaacattccatcttca |
39425098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 174
Target Start/End: Original strand, 39372262 - 39372396
Alignment:
| Q |
40 |
agctgttggattcatatgtgcttataacgtggccaacaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagc |
139 |
Q |
| |
|
||||||| ||||||| | ||| |||||| |||||||||||||| || ||||||||||||||| ||||| || |||| ||| ||| ||| || |||| || |
|
|
| T |
39372262 |
agctgttagattcatttctgcatataacttggccaacaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggc |
39372361 |
T |
|
| Q |
140 |
aagtgcaagacaaccaactccattgaaataaaggt |
174 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
39372362 |
agttgcaagaaaaccaactccattgaaatcaaggt |
39372396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 177
Target Start/End: Original strand, 39224812 - 39224914
Alignment:
| Q |
75 |
acaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggt |
174 |
Q |
| |
|
||||| |||||| ||||||| | ||||| |||||||| |||| ||| ||| | | || |||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
39224812 |
acaaggatcaattagttgatatgttgcaagaacatgtccagaatgccaaacttatttgtgagagcagttgcaagaaaaccaactccattgaaatcaaggt |
39224911 |
T |
|
| Q |
175 |
tct |
177 |
Q |
| |
|
||| |
|
|
| T |
39224912 |
tct |
39224914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 189
Target Start/End: Complemental strand, 39493029 - 39492916
Alignment:
| Q |
75 |
acaagaatcaatcagttgatctcttgcaggaacatgtgcagagtgcaaaagtgacttatgagagcaagtgcaagacaaccaactccattgaaataaaggt |
174 |
Q |
| |
|
|||| |||||| |||||||||||| | ||||||||||||| | |||| | | || |||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
39493029 |
acaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaaggt |
39492930 |
T |
|
| Q |
175 |
tctcttttcttattc |
189 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
39492929 |
t-ttttttcttattc |
39492916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 196 times since January 2019
Visitors: 6702