View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_high_87 (Length: 250)

Name: NF0908_high_87
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_high_87
NF0908_high_87
[»] chr1 (1 HSPs)
chr1 (1-241)||(43099285-43099543)
[»] chr3 (5 HSPs)
chr3 (158-218)||(14349704-14349764)
chr3 (26-139)||(48446504-48446616)
chr3 (158-218)||(13464576-13464636)
chr3 (158-217)||(48446413-48446472)
chr3 (88-125)||(14349621-14349658)
[»] chr7 (7 HSPs)
chr7 (5-141)||(47367555-47367690)
chr7 (165-216)||(47367730-47367781)
chr7 (165-218)||(39438392-39438445)
chr7 (183-217)||(19929361-19929395)
chr7 (155-217)||(39425290-39425352)
chr7 (155-217)||(39456888-39456950)
chr7 (88-137)||(39438498-39438547)
[»] chr4 (1 HSPs)
chr4 (160-233)||(38490024-38490097)
[»] chr5 (1 HSPs)
chr5 (184-217)||(4288024-4288057)


Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 43099543 - 43099285
Alignment:
Q  1 agtgaaggtatatgatataactcacaaaaaattatttcatgaaaaa--ccactacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaata 98  Q
    ||||||||||||||||||||||| |||||||   ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43099543 agtgaaggtatatgatataactcccaaaaaaaattttcatgaaaaaaaccactacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaata 43099444  T
Q  99 aaagcttacatgttgtagagccccttgtacatgatgataat--------atat--------tttgagggtaggtatactctgaattttcatagtctctag 182  Q
    |||||||||||||||||||||||||||||||||||||||||        | ||        |||||||||||||||||||||||||||||||||||||||    
T  43099443 aaagcttacatgttgtagagccccttgtacatgatgataatttcaaaaaacatttggtccctttgagggtaggtatactctgaattttcatagtctctag 43099344  T
Q  183 tacttttgaatgctgcataatatattttgcaaattccagctgatgttttgttcctatgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43099343 tacttttgaatgctgcataatatattttgcaaattccagctgatgttttgttcctatgc 43099285  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 14349704 - 14349764
Alignment:
Q  158 tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattc 218  Q
    |||||| |||| |||| || |||||||||||||||||||||||||||||||||||||||||    
T  14349704 tactcttaattgtcatggtttctagtacttttgaatgctgcataatatattttgcaaattc 14349764  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 48446616 - 48446504
Alignment:
Q  26 aaaaaattatttcatgaaaaaccactacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaataaaagcttacatgttgtagagccccttg 125  Q
    |||||| | |||||||||  || | |||||||| |||||||| ||||   ||| ||||||| ||||||||||| ||| ||||||||||||||||||||||    
T  48446616 aaaaaaatctttcatgaatcacaaatacatgttcttcaaaaa-catggcgtaactgtcatcctcaatcaaatagaagtttacatgttgtagagccccttg 48446518  T
Q  126 tacatgatgataat 139  Q
    | ||||| ||||||    
T  48446517 tgcatgaagataat 48446504  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 13464576 - 13464636
Alignment:
Q  158 tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattc 218  Q
    |||||| |||| |||| || |||||||| ||||||||||||||||||||||||||||||||    
T  13464576 tactcttaattgtcatggtttctagtacgtttgaatgctgcataatatattttgcaaattc 13464636  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 48446472 - 48446413
Alignment:
Q  158 tactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 217  Q
    ||||||||||| |||| ||||| ||||| |||||||||||||||||||||||| ||||||    
T  48446472 tactctgaattgtcatggtctcgagtacgtttgaatgctgcataatatattttacaaatt 48446413  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 14349621 - 14349658
Alignment:
Q  88 tcaatcaaataaaagcttacatgttgtagagccccttg 125  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  14349621 tcaatcaaataaaagtttacatgttgtagagccccttg 14349658  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 47367555 - 47367690
Alignment:
Q  5 aaggtatatgatataactcacaaaa-aattatttcatgaaaaaccactacatgtttttcaaaaaacatgaaataattgtcatcgtcaatcaaataaaagc 103  Q
    ||||| ||||||||||||| ||||  |||| ||||||||||||||||||||   ||  |||| ||||| || ||||| ||||| |||||||||||||||     
T  47367555 aaggtttatgatataactcccaaaccaattctttcatgaaaaaccactacacactt--caaataacataaattaattatcatcatcaatcaaataaaagt 47367652  T
Q  104 ttacatgttgtagagccccttgtacatgatgataatat 141  Q
    |||||  ||| ||||||||||||  |||| ||||||||    
T  47367653 ttacaatttggagagccccttgtggatgaagataatat 47367690  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 47367730 - 47367781
Alignment:
Q  165 aattttcatagtctctagtacttttgaatgctgcataatatattttgcaaat 216  Q
    |||| |||| |||||||||||||||||||| |||| ||||||||||||||||    
T  47367730 aattgtcatggtctctagtacttttgaatgttgcacaatatattttgcaaat 47367781  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 39438445 - 39438392
Alignment:
Q  165 aattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattc 218  Q
    |||| ||||||| |||||||||||||||| || |||||||||||||| ||||||    
T  39438445 aattgtcatagtttctagtacttttgaattctccataatatattttgtaaattc 39438392  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 19929395 - 19929361
Alignment:
Q  183 tacttttgaatgctgcataatatattttgcaaatt 217  Q
    ||||||||||| |||||||||||||||||||||||    
T  19929395 tacttttgaattctgcataatatattttgcaaatt 19929361  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 39425352 - 39425290
Alignment:
Q  155 gtatactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 217  Q
    ||||||| | |||| ||||||| |||||||||||||||| || ||| |||||| |||||||||    
T  39425352 gtatactattaattctcatagtttctagtacttttgaattctccatgatatatattgcaaatt 39425290  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 39456888 - 39456950
Alignment:
Q  155 gtatactctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaatt 217  Q
    ||||||| | |||| ||||||| |||||||||||||||| || ||| |||||| |||||||||    
T  39456888 gtatactattaattctcatagtttctagtacttttgaattctccatgatatatattgcaaatt 39456950  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 137
Target Start/End: Complemental strand, 39438547 - 39438498
Alignment:
Q  88 tcaatcaaataaaagcttacatgttgtagagccccttgtacatgatgata 137  Q
    ||||||||||||||| |||||||| |||||||| |||||| |||| ||||    
T  39438547 tcaatcaaataaaagtttacatgtcgtagagcctcttgtatatgaagata 39438498  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 38490024 - 38490097
Alignment:
Q  160 ctctgaattttcatagtctctagtacttttgaatgctgcataatatattttgcaaattccagctgatgttttgt 233  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| || | || |||||||||    
T  38490024 ctctgaattttcatggtctctagtacctttgaatggtgcataatatattctgcaaaatcgaactcatgttttgt 38490097  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 217
Target Start/End: Original strand, 4288024 - 4288057
Alignment:
Q  184 acttttgaatgctgcataatatattttgcaaatt 217  Q
    |||||||||| |||||||||||||||||||||||    
T  4288024 acttttgaattctgcataatatattttgcaaatt 4288057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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