View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_high_98 (Length: 221)
Name: NF0908_high_98
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_high_98 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 21123460 - 21123592
Alignment:
| Q |
1 |
aatcagttaatgtaattcacggtgatcattctcttgatcattttctacccggaaagatcgtcgagaagaagttctcgttttttggtgattctggtggtcc |
100 |
Q |
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| T |
21123460 |
aatcagttaatgtaattcatggtgatcattctcttgatcattttctacccggaaagatcgtcgagaagaagttctcgtttttcggtgattctggtggtcc |
21123559 |
T |
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| Q |
101 |
gtctattgaggatcttggtcaccatgctggata |
133 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
21123560 |
ttctattgaggatcttggtcaccatgctggata |
21123592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 21143386 - 21143515
Alignment:
| Q |
4 |
cagttaatgtaattcacggtgatcattctcttgatcattttctacccggaaagatcgtcgagaagaagttctcgttttttggtgattctggtggtccgtc |
103 |
Q |
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|||||||| ||||||| |||||||| ||| ||||||||||| | || ||||| |||||||||||||||||||||||||| |||||||| |||||| || |
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| T |
21143386 |
cagttaatataattcatggtgatcactctattgatcattttgtccctggaaaactcgtcgagaagaagttctcgttttttagtgattctaatggtccttc |
21143485 |
T |
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| Q |
104 |
tattgaggatcttggtcaccatgctggata |
133 |
Q |
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|||||| ||||||||||| ||||| ||||| |
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| T |
21143486 |
tattgaagatcttggtcatcatgccggata |
21143515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 21149226 - 21149326
Alignment:
| Q |
33 |
cttgatcattttctacccggaaagatcgtcgagaagaagttctcgttttttggtgattctggtggtccgtctattgaggatcttggtcaccatgctggat |
132 |
Q |
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|||||| ||||| | || ||||||||||| ||||| |||||||||||||||||| |||||| ||| | |||||||| |||||||||||||||| |||| |
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| T |
21149226 |
cttgatgattttgtccctggaaagatcgtggagaaaaagttctcgttttttggtcattctgatgggctttctattgataatcttggtcaccatgccggat |
21149325 |
T |
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| Q |
133 |
a |
133 |
Q |
| |
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| |
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| T |
21149326 |
a |
21149326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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