View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_102 (Length: 309)
Name: NF0908_low_102
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_102 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 232
Target Start/End: Original strand, 19650794 - 19650929
Alignment:
| Q |
97 |
catcatcacacacttgcatcttagtctcctgtaaacacaaaattcgcggagtcttatcggtaactagagaacgcacttccttgcgtttttctaagcctcc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
19650794 |
catcatcacacacttgcatcttagtctcctgtaaacacaaaatccacggagtcttatcggaaactagagaacgcacttccttacgtttttctaagcctcc |
19650893 |
T |
|
| Q |
197 |
caaccccctcacattccaagaaataaacttcatctc |
232 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
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|
| T |
19650894 |
caaccccctcacatttcaagaaataaacttcatctc |
19650929 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 229
Target Start/End: Original strand, 11466543 - 11466580
Alignment:
| Q |
192 |
cctcccaaccccctcacattccaagaaataaacttcat |
229 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||| |
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|
| T |
11466543 |
cctctcaaccccctcacattccaagaaataatcttcat |
11466580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Complemental strand, 11525794 - 11525762
Alignment:
| Q |
197 |
caaccccctcacattccaagaaataaacttcat |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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|
| T |
11525794 |
caaccccctcacattccaagaaataatcttcat |
11525762 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 4985065 - 4984930
Alignment:
| Q |
97 |
catcatcacacacttgcatcttagtctcctgtaaacacaaaattcgcggagtcttatcggtaactagagaacgcacttccttgcgtttttctaagcctcc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4985065 |
catcatcacacacttgcatcttagtctcctgtaaagacaaaatccacggagtcttaccggaaactagagaacgcacttccttacgtttttctaagcctcc |
4984966 |
T |
|
| Q |
197 |
caaccccctcacattccaagaaataaacttcatctc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
4984965 |
caaccccctcacattccaagaaataaacttcatctc |
4984930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 25501990 - 25501861
Alignment:
| Q |
100 |
catcacacacttgcatcttagtctcctgtaaacacaaaattcgcggagtcttatcggtaactagagaacgcacttccttgcgtttttctaagcctcccaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
25501990 |
catcacacacttgcatcttagtctcctgtaaacacaaaatccacggagtcttatcggaaactagagaacgcacttccttacgtttttctaagcctcccaa |
25501891 |
T |
|
| Q |
200 |
ccccctcacattccaagaaataaacttcat |
229 |
Q |
| |
|
|||||||||||| |||||||| |||||||| |
|
|
| T |
25501890 |
ccccctcacatttcaagaaattaacttcat |
25501861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 99 - 230
Target Start/End: Complemental strand, 10619677 - 10619546
Alignment:
| Q |
99 |
tcatcacacacttgcatcttagtctcctgtaaacacaaaattcgcggagtcttatcggtaactagagaacgcacttccttgcgtttttctaagcctccca |
198 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |||| |||| ||| ||||||||||||| || ||||| | |||||||||||||||| |
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|
| T |
10619677 |
tcatcacacacttgcatcttagtttcttgtaaacacaaaatcaacggactcttttcgataactagagaacgaacatcctttctcttttctaagcctccca |
10619578 |
T |
|
| Q |
199 |
accccctcacattccaagaaataaacttcatc |
230 |
Q |
| |
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| ||||| |||||||||||||| ||||||||| |
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|
| T |
10619577 |
atcccctaacattccaagaaatcaacttcatc |
10619546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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