View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_109 (Length: 306)

Name: NF0908_low_109
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_109
NF0908_low_109
[»] scaffold0334 (1 HSPs)
scaffold0334 (98-169)||(18463-18534)
[»] chr8 (9 HSPs)
chr8 (98-169)||(18722239-18722310)
chr8 (98-170)||(25592429-25592501)
chr8 (98-165)||(25595614-25595681)
chr8 (98-170)||(33878167-33878239)
chr8 (98-169)||(23612569-23612640)
chr8 (105-172)||(10663008-10663075)
chr8 (101-169)||(14589748-14589816)
chr8 (98-169)||(43682726-43682798)
chr8 (98-170)||(22174820-22174892)
[»] chr6 (4 HSPs)
chr6 (98-170)||(23379743-23379815)
chr6 (98-165)||(23389082-23389149)
chr6 (98-169)||(31071494-31071565)
chr6 (105-170)||(5739125-5739191)
[»] scaffold0035 (1 HSPs)
scaffold0035 (98-169)||(61597-61668)
[»] chr5 (7 HSPs)
chr5 (98-169)||(42061486-42061557)
chr5 (98-170)||(28442110-28442182)
chr5 (98-169)||(14376763-14376834)
chr5 (98-169)||(31862872-31862943)
chr5 (100-169)||(21336672-21336742)
chr5 (100-169)||(21827971-21828041)
chr5 (98-170)||(14016965-14017037)
[»] chr4 (24 HSPs)
chr4 (98-169)||(19865572-19865643)
chr4 (98-173)||(12237350-12237425)
chr4 (98-170)||(3798725-3798797)
chr4 (98-170)||(5669627-5669699)
chr4 (98-170)||(33410891-33410963)
chr4 (98-169)||(18910604-18910675)
chr4 (98-168)||(19861216-19861286)
chr4 (169-220)||(3909926-3909977)
chr4 (98-169)||(9716951-9717022)
chr4 (98-169)||(37104170-37104241)
chr4 (98-170)||(56198028-56198100)
chr4 (98-169)||(5721900-5721971)
chr4 (98-169)||(15431164-15431235)
chr4 (98-169)||(15437778-15437849)
chr4 (98-169)||(15405827-15405898)
chr4 (98-169)||(47114776-47114847)
chr4 (98-169)||(56194722-56194793)
chr4 (100-170)||(27013228-27013299)
chr4 (100-170)||(3718335-3718405)
chr4 (98-169)||(33926121-33926192)
chr4 (100-169)||(12782106-12782175)
chr4 (100-169)||(44164001-44164071)
chr4 (98-169)||(29323979-29324050)
chr4 (98-169)||(44809833-44809904)
[»] chr3 (12 HSPs)
chr3 (98-169)||(10107543-10107614)
chr3 (98-169)||(17532598-17532669)
chr3 (98-169)||(52198305-52198376)
chr3 (98-170)||(10884017-10884089)
chr3 (98-170)||(23299482-23299554)
chr3 (98-169)||(18645670-18645741)
chr3 (98-169)||(538015-538086)
chr3 (98-169)||(6921890-6921961)
chr3 (100-169)||(53814971-53815040)
chr3 (100-169)||(29344703-29344773)
chr3 (100-169)||(54460367-54460436)
chr3 (100-168)||(9380012-9380080)
[»] chr7 (13 HSPs)
chr7 (98-169)||(26556510-26556581)
chr7 (98-170)||(4542073-4542145)
chr7 (98-169)||(10431386-10431457)
chr7 (98-169)||(2442206-2442277)
chr7 (98-169)||(48645850-48645921)
chr7 (98-169)||(16164889-16164960)
chr7 (98-169)||(48644616-48644687)
chr7 (98-169)||(6602621-6602692)
chr7 (100-170)||(45288069-45288139)
chr7 (100-169)||(45291405-45291474)
chr7 (100-169)||(17729973-17730042)
chr7 (100-169)||(20081571-20081640)
chr7 (140-172)||(13450736-13450768)
[»] chr1 (6 HSPs)
chr1 (98-169)||(49499497-49499568)
chr1 (98-169)||(1951274-1951345)
chr1 (98-170)||(2793298-2793370)
chr1 (98-169)||(31204014-31204085)
chr1 (98-169)||(6071829-6071895)
chr1 (100-169)||(41059164-41059234)
[»] chr2 (14 HSPs)
chr2 (98-169)||(15466170-15466241)
chr2 (98-169)||(36809364-36809435)
chr2 (98-169)||(38006215-38006286)
chr2 (98-170)||(26358671-26358743)
chr2 (98-169)||(25821847-25821922)
chr2 (98-170)||(25873202-25873274)
chr2 (98-166)||(36985664-36985732)
chr2 (98-169)||(25869835-25869906)
chr2 (98-170)||(45456299-45456371)
chr2 (98-169)||(30275620-30275691)
chr2 (98-169)||(45453051-45453122)
chr2 (100-169)||(10599951-10600020)
chr2 (98-169)||(29439597-29439666)
chr2 (98-169)||(38014636-38014707)
[»] scaffold0045 (1 HSPs)
scaffold0045 (98-169)||(88965-89036)
[»] scaffold1684 (1 HSPs)
scaffold1684 (98-169)||(403-474)
[»] scaffold0005 (1 HSPs)
scaffold0005 (98-158)||(290974-291034)
[»] scaffold0381 (1 HSPs)
scaffold0381 (100-170)||(6484-6555)
[»] scaffold0757 (1 HSPs)
scaffold0757 (100-169)||(4563-4632)


Alignment Details
Target: scaffold0334 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 18534 - 18463
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18534 gtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 18463  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 18722239 - 18722310
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18722239 gtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 18722310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 25592429 - 25592501
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  25592429 gtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcgtcac 25592501  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 25595614 - 25595681
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtc 165  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  25595614 gtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacaatgaatgactgactgtc 25595681  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 33878167 - 33878239
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  33878167 gtttaaactttcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 33878239  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 23612640 - 23612569
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||  ||| |||||||||||||||| ||||||||||||||||||||||    
T  23612640 gtttaaacttgcttgtgaactcaaaatctcatcaaaatgacactaaaaatagtgaatgactgactgtcatca 23612569  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 10663075 - 10663008
Alignment:
Q  105 cttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcacct 172  Q
    ||||| ||||||||||| ||| |||||||| ||| ||||||| |||||||||||||||||||||||||    
T  10663075 cttgcttgtgaactcaacatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcacct 10663008  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 14589748 - 14589816
Alignment:
Q  101 taagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    ||||||||| ||||||||||||| | |||||||||||||||||||| | ||||||||| ||| ||||||    
T  14589748 taagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataatgaatgactaactatcatca 14589816  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 43682726 - 43682798
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaa-tgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| | ||||||||||||| |||||||| ||| |||||||| |||||||||||||||| |||||    
T  43682726 gtttaaacttgcttatgaactcaaaatatcatgaaaaatgatactaaaaatagtgaatgactgactgccatca 43682798  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 22174820 - 22174892
Alignment:
Q  98 gtttaagcttgcatgtgaactc-aaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||||| ||||||||| |||| | ||||||||||||||| |||| | |||||| ||||||||||||||    
T  22174820 gtttaagcttgcttgtgaactcaaaaacatcatgaaaatgacact-aaaataatgaatggctgactgtcatcac 22174892  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 23379743 - 23379815
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  23379743 gtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcgtcac 23379815  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 23389082 - 23389149
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtc 165  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23389082 gtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 23389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 31071565 - 31071494
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    ||||||||||||  |||||||||||| | |||||||||||||||||||| |  |||||||||||||||||||    
T  31071565 gtttaagcttgctcgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactgtcatca 31071494  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 5739125 - 5739191
Alignment:
Q  105 cttgcatgtgaactcaaaataacatgaaaatga-cactaaaaacagtgaatgactgactgtcatcac 170  Q
    ||||| ||||||||||| ||| ||||||||  | | ||||||| |||||||||||||||||||||||    
T  5739125 cttgcttgtgaactcaacatatcatgaaaaaaaactctaaaaatagtgaatgactgactgtcatcac 5739191  T

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Target: scaffold0035 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 61668 - 61597
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  61668 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 61597  T

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Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 42061557 - 42061486
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42061557 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 42061486  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 28442110 - 28442182
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  28442110 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 28442182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 14376763 - 14376834
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  14376763 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 14376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 31862943 - 31862872
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||| |  |||||||||||||||||||    
T  31862943 gtttaagcttgcttgtgaactcaaaatattatgaaaatgacactaaaaataaggaatgactgactgtcatca 31862872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 21336672 - 21336742
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| ||  || |||| ||| ||||||| ||||||||||||||||||||||    
T  21336672 ttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 21827971 - 21828041
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| || |||||||||| || ||| |||| ||| ||||||| || |||||||||||||||||||    
T  21827971 ttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 21828041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 14016965 - 14017037
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||  |||||||||||||||||||    
T  14016965 gtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgactgactgtcatcac 14017037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 19865572 - 19865643
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19865572 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 19865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 173
Target Start/End: Complemental strand, 12237425 - 12237350
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcacctc 173  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  12237425 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgaatgactatcatcacctc 12237350  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 3798725 - 3798797
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  3798725 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 3798797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 5669699 - 5669627
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  5669699 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 5669627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 33410891 - 33410963
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  33410891 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 33410963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 18910675 - 18910604
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18910675 gtttaagtttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 18910604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 19861216 - 19861286
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatc 168  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  19861216 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgtctgccatc 19861286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 3909977 - 3909926
Alignment:
Q  169 acctctcgttactgtatctctcaaaaatgagctgaaacacttgaatagtcct 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3909977 acctctcgttactgtatctctcaaaaatgagctgaaacacttgaatagtcct 3909926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 9717022 - 9716951
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||    
T  9717022 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgaccgactgtcatca 9716951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 37104170 - 37104241
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||| ||||||||    
T  37104170 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgatactaaacacagtgaatgactgagtgtcatca 37104241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 56198100 - 56198028
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  ||||||||||||||||||||    
T  56198100 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactgactgtcatcac 56198028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 5721900 - 5721971
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||  ||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  5721900 gtttaagcttgtttgtgaacttgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatca 5721971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 15431235 - 15431164
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  15431235 gtttaaacttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 15437849 - 15437778
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  15437849 gtttaaacttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 15405827 - 15405898
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  |||||||||||| ||||||    
T  15405827 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactttcatca 15405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 47114847 - 47114776
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||||| |  |||||||||||||||||||    
T  47114847 gtttaagcttgcttgtgaactcaaaacataatgaaaatgacactaaaaataaagaatgactgactgtcatca 47114776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 56194793 - 56194722
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  |||||| ||||||||||||    
T  56194793 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgattgactgtcatca 56194722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 27013299 - 27013228
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| || ||||||||||||||||||||    
T  27013299 ttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 27013228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 3718405 - 3718335
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||| ||||||||||||| || ||| ||||| || ||||||| ||||||||| |||||||||||||    
T  3718405 ttaagcttgcttgtgaactcaaaaatatcataaaaat-actctaaaaatagtgaatgagtgactgtcatcac 3718335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 33926192 - 33926121
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||| | | |||| ||||||||||||||  |   ||||||||||||||||||    
T  33926192 gtttaagcttgcttgtgaactcaagacatcatgcaaatgacactaaaagtaacaaatgactgactgtcatca 33926121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 12782175 - 12782106
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||| ||||||||| || ||| |||||||| ||||||| || |||||||||||||||||||    
T  12782175 ttaagcttgcttgtaaactcaaaaatatcat-aaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 44164071 - 44164001
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||| ||||| ||||||||||||| || ||| |||| |||  |||||| ||||||||||||||||||||||    
T  44164071 ttaatcttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 29324050 - 29323979
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||  ||||||||||||||||||    
T  29324050 gtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgactgactgtcatca 29323979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 44809833 - 44809904
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||  ||||||||||||||||||    
T  44809833 gtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgactgactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 10107543 - 10107614
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10107543 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 10107614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 17532598 - 17532669
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  17532598 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtaatca 17532669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 52198376 - 52198305
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||    
T  52198376 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaacatagtgaatgactgactgtcatca 52198305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 10884089 - 10884017
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||    
T  10884089 gtttaaacttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 10884017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 23299482 - 23299554
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||    
T  23299482 gtttaaacttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 23299554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 18645670 - 18645741
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||  ||||||||  ||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  18645670 gtttaagcttgtttgtgaacttgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatca 18645741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 538086 - 538015
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||  ||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  538086 gtttaaacttgtttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 6921961 - 6921890
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||| | | ||||||| ||||||||||||||||||||||    
T  6921961 gtttaaacttgcttgtgaactcaaaatatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 53815040 - 53814971
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||||||||||||||||||||||    
T  53815040 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 29344703 - 29344773
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||| ||||| ||||||||||||| || ||| | || ||| ||||||| ||||||||||||||||||||||    
T  29344703 ttaatcttgcttgtgaactcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatca 29344773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 54460436 - 54460367
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    ||||| |||| ||||||||||||| || ||| |||| ||| ||||||| ||||||||||||||||||||||    
T  54460436 ttaagattgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatca 54460367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 9380080 - 9380012
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatc 168  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| || ||||||||||||||||||    
T  9380080 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 26556581 - 26556510
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  26556581 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 4542145 - 4542073
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  4542145 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 4542073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 10431457 - 10431386
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  10431457 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 2442206 - 2442277
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||    
T  2442206 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacacttaaaatagtgaatgactgactgtcatca 2442277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 48645850 - 48645921
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  |||||||||||||||||||    
T  48645850 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactgtcatca 48645921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 16164960 - 16164889
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | ||||||||| |||||||||| |  |||||||||||||||||||    
T  16164960 gtttaagcttgcttgtgaactcaaaacatcatgaaaattacactaaaaataacgaatgactgactgtcatca 16164889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 48644687 - 48644616
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||||| |  |||||||||||||||||||    
T  48644687 gtttaagcttgcttgtgaactcaaaacattatgaaaatgacactaaaaataaagaatgactgactgtcatca 48644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 6602692 - 6602621
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| |||||||| |||| |  ||||| ||||||||||||| |  |||||||||||||||||||    
T  6602692 gtttaagcttgcttgtgaacttaaaacattatgaacatgacactaaaaataacgaatgactgactgtcatca 6602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 45288069 - 45288139
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| |||||||||||||||||||||||    
T  45288069 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatcac 45288139  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 45291405 - 45291474
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||||||||||||||||||||||    
T  45291405 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 17730042 - 17729973
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| |||||| |||||||||||||||    
T  17730042 ttaagcttgcttgtgaactcaaaaatatcat-aaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 20081571 - 20081640
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| || ||| ||||  || ||||||| ||||||||||||||||||||||    
T  20081571 ttaagcttgcttgtgaactcaaaaatatcataaaaac-actctaaaaatagtgaatgactgactgtcatca 20081640  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 172
Target Start/End: Original strand, 13450736 - 13450768
Alignment:
Q  140 ctaaaaacagtgaatgactgactgtcatcacct 172  Q
    ||||||| |||||||||||||||||||||||||    
T  13450736 ctaaaaatagtgaatgactgactgtcatcacct 13450768  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 49499497 - 49499568
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||    
T  49499497 gtttaagcttgcatgtgaactcaaaatatcatgaaaataacactaaaaacagcgaatgactgactgtcatca 49499568  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 1951274 - 1951345
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||| ||| ||||||||||| ||| |||| ||||||||||||||||||||||    
T  1951274 gtttaaacttgcttgtgaactcaagatatcatgaaaatgatacttaaaatagtgaatgactgactgtcatca 1951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 2793370 - 2793298
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| ||| |||| ||| ||||||| |||||| ||||||||||||||||    
T  2793370 gtttaaacttgcttgtgaactcaaaatatcattaaaaagactctaaaaatagtgaacgactgactgtcatcac 2793298  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 31204085 - 31204014
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| |  ||||||||||||||||||| |  |||||||||||| ||||||    
T  31204085 gtttaagcttgcttgtgaactcaaaacataatgaaaatgacactaaaaataaagaatgactgactatcatca 31204014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 6071829 - 6071895
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| ||||||||||||||     ||| | ||||||||||||||||||||    
T  6071829 gtttaagcttgcttgtgaactcaaaacaacatgaaaatgac-----aaataatgaatgactgactgtcatca 6071895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 41059164 - 41059234
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| || |||||||||| || ||| |||| ||| ||||||| || |||||||||||||||||||    
T  41059164 ttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 15466241 - 15466170
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||    
T  15466241 gtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgattgtcatca 15466170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 36809364 - 36809435
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  36809364 gtttaaacttgcttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 36809435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 38006215 - 38006286
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  38006215 gtttaagcttgtttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtaatca 38006286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 26358743 - 26358671
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||| | ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  26358743 gtttaaacttccttgtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcac 26358671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 25821847 - 25821922
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataa----catgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| |||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||    
T  25821847 gtttaagcttgcttgtgaactcaaaatatatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 25821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 25873274 - 25873202
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||| ||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||    
T  25873274 gtttaaacttgcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatcac 25873202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 36985664 - 36985732
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtca 166  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  ||||||||||||||||    
T  36985664 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactgactgtca 36985732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 25869906 - 25869835
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||| | ||||||||||||||| |||||||| ||| ||||||| ||||||||||||||||||||||    
T  25869906 gtttaaactttcttgtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 45456371 - 45456299
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  ||||| |||| |||||||||    
T  45456371 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatggctgattgtcatcac 45456299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 30275620 - 30275691
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||  |||||| |||||||| |||||||||||||||||||| | ||||||||||||| ||||||    
T  30275620 gtttaaacttgtttgtgaattcaaaatatcatgaaaatgacactaaaaatattgaatgactgactatcatca 30275691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 45453122 - 45453051
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | |||||||||||| ||||||| |  |||||||||| ||||||||    
T  45453122 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgaccctaaaaataaagaatgactgattgtcatca 45453051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 10600020 - 10599951
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| || ||| |||| ||  ||||||| ||||||||||||||||||||||    
T  10600020 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 29439666 - 29439597
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||| ||||| ||||||||||| ||  |||||||||||||||||||  |  ||||||| |||||||||||    
T  29439666 gtttaaacttgcttgtgaactcaacat--catgaaaatgacactaaaattaacgaatgacggactgtcatca 29439597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 38014707 - 38014636
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||  ||||||||||||||||||    
T  38014707 gtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgactgactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 89036 - 88965
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  |||||||||||||||||||    
T  89036 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactgactgtcatca 88965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 403 - 474
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||| |  |||||||||||| ||||||    
T  403 gtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactttcatca 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 158
Target Start/End: Complemental strand, 291034 - 290974
Alignment:
Q  98 gtttaagcttgcatgtgaactcaaaataacatgaaaatgacactaaaaacagtgaatgact 158  Q
    |||||| ||||| |||||||| |||||| |||||||||||||||||||| |||||||||||    
T  291034 gtttaaacttgcttgtgaacttaaaatatcatgaaaatgacactaaaaatagtgaatgact 290974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 6484 - 6555
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatcac 170  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| || ||||||||||||||||||||    
T  6484 ttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcac 6555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 4632 - 4563
Alignment:
Q  100 ttaagcttgcatgtgaactcaaaa-taacatgaaaatgacactaaaaacagtgaatgactgactgtcatca 169  Q
    |||||||||| ||||||||||||| || ||| |||| ||| ||||||| ||||||||||||||||||||||    
T  4632 ttaagcttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatca 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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