View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_11 (Length: 573)
Name: NF0908_low_11
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 22 - 546
Target Start/End: Complemental strand, 43224409 - 43223886
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacgcaatccccaatttcctggaattagccaaggaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224409 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacgcaatccccaatttcctggaattagccaaggaa |
43224310 |
T |
|
| Q |
122 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224309 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacag |
43224210 |
T |
|
| Q |
222 |
aattggatgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctccttttgtcgctcttagagc |
321 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224209 |
aattggatgaattaggtgttcaatataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagc |
43224110 |
T |
|
| Q |
322 |
tgacatggatgctcttctcatgcaggtctacannnnnnnctgagtgttttggttttcaaccatatattatcttggattttatattaggatactgtttcat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43224109 |
tgacatggatgctcttctcatgcaggtctaca-ttttttctgagtgttttggttttcaaccatatattatcttggattttttattaggatactgtttcat |
43224011 |
T |
|
| Q |
422 |
ctatatttcattgatgannnnnnnnggttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgat |
521 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43224010 |
ctatatttcattgatgattttttttggttaaccttaggaattggtggagtgggagcataagagtaaagtgcctggaaagatgcatgcatgtggccatgat |
43223911 |
T |
|
| Q |
522 |
gctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
43223910 |
gctcatgttgctatgcttcttggtg |
43223886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 348
Target Start/End: Original strand, 41654489 - 41654815
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacgcaatccccaatttcctggaattagccaaggaa |
121 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
41654489 |
catcgtcattttcatttcctttttatctgctacaccaatcttctcagactcttccaccagttcaaatgcaatccccaacttcctggaattagccaaggaa |
41654588 |
T |
|
| Q |
122 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41654589 |
cctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaagaatttgagaccagtaagcttataagaacaa |
41654688 |
T |
|
| Q |
222 |
aattggatgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctccttttgtcgctcttagagc |
321 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41654689 |
aattggatgaattgggtgttacatataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctctcagagc |
41654788 |
T |
|
| Q |
322 |
tgacatggatgctcttctcatgcaggt |
348 |
Q |
| |
|
||| |||||||||||||| |||||||| |
|
|
| T |
41654789 |
tgaaatggatgctcttcttatgcaggt |
41654815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 104 - 348
Target Start/End: Complemental strand, 43213592 - 43213348
Alignment:
| Q |
104 |
ctggaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagacca |
203 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
43213592 |
ctggaattagccaaagagcctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaagttggttatgaagaatttgaaacca |
43213493 |
T |
|
| Q |
204 |
gtaagcttataagaacagaattggatgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctcc |
303 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43213492 |
gtaagcttataagaacaaaattagatgaattaggtgtcccatataaacatccagttgtagtgacaggtgttattggttacataggaactggtcttcctcc |
43213393 |
T |
|
| Q |
304 |
ttttgtcgctcttagagctgacatggatgctcttctcatgcaggt |
348 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
43213392 |
ttttgtcgctcttagagctgagatggatgctcttcttatgcaggt |
43213348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 348
Target Start/End: Original strand, 41649937 - 41650275
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccag---ttcaaacg---------caatccccaatttcctggaa |
109 |
Q |
| |
|
||||||||| ||||||| ||||| |||||| |||||||||||||||||||| ||||||| |||||| | ||||||| || || || | |
|
|
| T |
41649937 |
catcatcattttcattttcttttcatctgcaacaccaatcttctcagattcctcctccaccacttcaaatgaccacttatcaatcccaaactttctaaat |
41650036 |
T |
|
| Q |
110 |
ttagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagc |
209 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| | |||||| | || ||||||| |
|
|
| T |
41650037 |
ttatccaaggaacctcaagtttttgatttcatggttgatataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttaaaactagtaagc |
41650136 |
T |
|
| Q |
210 |
ttataagaacagaattggatgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctccttttgt |
309 |
Q |
| |
|
||||| ||||| |||||||||||||| |||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41650137 |
ttatacgaacaaaattggatgaattaggtgtcccatataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgt |
41650236 |
T |
|
| Q |
310 |
cgctcttagagctgacatggatgctcttctcatgcaggt |
348 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
41650237 |
agctctcagagctgatatggatgctcttctcatgcaggt |
41650275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 43228225 - 43227882
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcct------ccagttcaaacg---------caatccccaatttcctg |
106 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||| |||||||||||||||| |||| ||| |||||| | ||||||| || || || |
|
|
| T |
43228225 |
catcatcattttcattttctttttatctgcaacatcaatcttctcagattcctcctcctccaccacttcaaatgaccacttatcaatcccaaactttcta |
43228126 |
T |
|
| Q |
107 |
gaattagccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagta |
206 |
Q |
| |
|
|| ||||| || || ||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||| ||||| | ||||||||||| |||| |
|
|
| T |
43228125 |
gatttagctaaagagcctaaagtttttgactggatggtttctataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttgagactagta |
43228026 |
T |
|
| Q |
207 |
agcttataagaacagaattggatgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctccttt |
306 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43228025 |
agcttataagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttt |
43227926 |
T |
|
| Q |
307 |
tgtcgctcttagagctgacatggatgctcttctcatgcaggtct |
350 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43227925 |
tgttgctcttagagctgacatggatgctcttctcatgcaggtct |
43227882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 22 - 352
Target Start/End: Complemental strand, 43206709 - 43206370
Alignment:
| Q |
22 |
catcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctccagttcaaacg---------caatccccaatttcctggaatta |
112 |
Q |
| |
|
||||||||| ||||||| |||||| ||||| |||||| |||||||||| | || |||| |||||| | ||||||| || || || || ||| |
|
|
| T |
43206709 |
catcatcattttcattttctttttctctgcaacaccagtcttctcagacttctcttccacttcaaatgaccacttatcaatcccaaactttctagattta |
43206610 |
T |
|
| Q |
113 |
gccaaggaacctcaagtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagctta |
212 |
Q |
| |
|
|| || || ||| |||||||||| ||||||||| ||||||||| || |||||||||||||||||||| ||||| | ||||||||||| |||||||||| |
|
|
| T |
43206609 |
gctaaagagcctaaagtttttgactggatggtttctataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttgagactagtaagctta |
43206510 |
T |
|
| Q |
213 |
taagaacagaattggatgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctccttttgtcgc |
312 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
43206509 |
taagaacaaaattggatgagttgggtgttcaatataaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgttgc |
43206410 |
T |
|
| Q |
313 |
tcttagagctgacatggatgctcttctcatgcaggtctac |
352 |
Q |
| |
|
|||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
43206409 |
tcttagagctgatatggatgctcttcttattcaggtctac |
43206370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 363 - 546
Target Start/End: Original strand, 41654905 - 41655090
Alignment:
| Q |
363 |
gagtgttttggttttcaaccatatattatcttggattttatattaggata--ctgtttcatctatatttcattgatgannnnnnnn-ggttaaccttagg |
459 |
Q |
| |
|
||||||||||||||| ||| ||||||| || | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41654905 |
gagtgttttggttttaaac-atatattgtcatatattttatattaggatatactgtttcatctatatttcattgatgaattttttttggttaaccttagg |
41655003 |
T |
|
| Q |
460 |
aattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41655004 |
aattggtggagtgggagcataagagtaaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
41655090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 449 - 546
Target Start/End: Original strand, 41650635 - 41650732
Alignment:
| Q |
449 |
ttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
41650635 |
ttaacattaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatgcatgtggtcatgatgctcacgtggctatgcttcttggtg |
41650732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 455 - 546
Target Start/End: Complemental strand, 43206178 - 43206087
Alignment:
| Q |
455 |
ttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43206178 |
ttaggaaatggtggagtgggagcataaaagtaaagtacctggaaagatgcatgcatgtggtcatgatgctcatgttgctatgcttcttggtg |
43206087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 448 - 546
Target Start/End: Complemental strand, 43213120 - 43213022
Alignment:
| Q |
448 |
gttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
43213120 |
gttaacttcaggaattggtggagtgggagcataagagtaaagtacctggaaagatgcatggatgtggtcatgatgctcatgttgctatgcttctaggtg |
43213022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 449 - 546
Target Start/End: Complemental strand, 43227516 - 43227419
Alignment:
| Q |
449 |
ttaaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43227516 |
ttaacattaggaattgttggaatgggagcataaaagcaaagtacctggaaagatgcatgcatgtggtcatgatgctcatgttgctatgcttcttggtg |
43227419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 31558552 - 31558601
Alignment:
| Q |
497 |
aaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
31558552 |
aaagatgcatgcgtgtggtcatgatgctcatgttaccatgctacttggtg |
31558601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 43213685 - 43213628
Alignment:
| Q |
23 |
atcatcatgttcatttcctttttatctgctacaccaatcttctcagattcttcctcca |
80 |
Q |
| |
|
|||||||| ||||||| |||||||| ||| ||||| || ||||||||||| ||||||| |
|
|
| T |
43213685 |
atcatcattttcattttctttttatgtgcaacacctattttctcagattcctcctcca |
43213628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 7e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 128 - 337
Target Start/End: Complemental strand, 5073836 - 5073627
Alignment:
| Q |
128 |
gtttttgattggatggttgatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacagaattgg |
227 |
Q |
| |
|
|||| |||||||||| | |||| || ||||| |||||||||||||| ||| | |||||||||||||||||||| ||| | | |||||||||||||||| |
|
|
| T |
5073836 |
gtttatgattggatgatcaatatcagaaggaaaattcatgagaatccagaattgggttatgaggaatttgagacaagtgaattgataagaacagaattgg |
5073737 |
T |
|
| Q |
228 |
atgaattaagtgttcaatataaacatccagttgcagtgacaggtgttattgcttacataggaactggtcttcctccttttgtcgctcttagagctgacat |
327 |
Q |
| |
|
|| || | ||| ||| |||||| ||||||||||| | || ||||| |||| || |||||||||||| | |||||||||| ||| | |||||||| || |
|
|
| T |
5073736 |
ataaactgagtattccctataaatatccagttgcaatcactggtgtcattggtttcataggaactggattgtctccttttgttgctttaagagctgatat |
5073637 |
T |
|
| Q |
328 |
ggatgctctt |
337 |
Q |
| |
|
|||||||||| |
|
|
| T |
5073636 |
ggatgctctt |
5073627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 451 - 546
Target Start/End: Complemental strand, 5072808 - 5072713
Alignment:
| Q |
451 |
aaccttaggaattggtggagtgggagcataagagtgaagtgcctggaaagatgcatgcatgtggccatgatgctcatgttgctatgcttcttggtg |
546 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||| | || ||||||||||||||||| ||||| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
5072808 |
aaccttaggaaatggtggagtgggagcacaggagtaaggtacctggaaagatgcatgcgtgtggtcatgatgctcatgttaccatgctacttggtg |
5072713 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 31839492 - 31839458
Alignment:
| Q |
300 |
ctccttttgtcgctcttagagctgacatggatgct |
334 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
31839492 |
ctccttttgttgctcttagagctgacatggatgct |
31839458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 26262851 - 26262888
Alignment:
| Q |
297 |
ttcctccttttgtcgctcttagagctgacatggatgct |
334 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
26262851 |
ttcctccatttgttgctcttagagctgacatggatgct |
26262888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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