View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_111 (Length: 303)
Name: NF0908_low_111
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_111 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 5051987 - 5052131
Alignment:
| Q |
71 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacgtactgccatgttcataggccac |
170 |
Q |
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| T |
5051987 |
atcacgaggagaagattgaggggacatgacatttgatatctattagttgtgtactttaaccccctcattccctttacttactgccatgttcataggccac |
5052086 |
T |
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| Q |
171 |
tcttaaagatagtgaggttcaaagtattgacattgccaagaaggc |
215 |
Q |
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| T |
5052087 |
tctcaaagacagtgaggttcaatgtattgacattgccaagaaggc |
5052131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 37704647 - 37704560
Alignment:
| Q |
216 |
attacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
303 |
Q |
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| T |
37704647 |
attacgttcaaaaagtctggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
37704560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 37699169 - 37699081
Alignment:
| Q |
216 |
attacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
303 |
Q |
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| T |
37699169 |
attacgttcgaaaagtcttggttttccaagatgttatttagtttaatgaacaccaaacttttctatgattgttactgaattaatattgt |
37699081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 37437713 - 37437625
Alignment:
| Q |
216 |
attacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggttactgaattaatattgt |
303 |
Q |
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| T |
37437713 |
attacgttcgaaaagtcttggtcttccaatatgttatttagtttaatgaacaccaaacttttctatgattgttattgaattaatattgt |
37437625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 216 - 288
Target Start/End: Complemental strand, 37698805 - 37698732
Alignment:
| Q |
216 |
attacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatgatggtta |
288 |
Q |
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| T |
37698805 |
attacgttaaaaaagtcttggtcttccaagatgttatttagtttaacgaacaccaaacttttgtatgattgtta |
37698732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 16841043 - 16841109
Alignment:
| Q |
216 |
attacgttcaaaaagtct-ggtcttcgaagatattatttagtttaatgaacaccaaacttttctatg |
281 |
Q |
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| T |
16841043 |
attacgttcaaaaagtcttggtcttccaagattttatttagtttattaaacaccaaacttttgtatg |
16841109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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