View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_112 (Length: 302)
Name: NF0908_low_112
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_112 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 66 - 302
Target Start/End: Complemental strand, 41901156 - 41900920
Alignment:
| Q |
66 |
aatatgcaaaacaatcccaatcacaatacatcctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccacc |
165 |
Q |
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| T |
41901156 |
aatatgcaaaacacccacaatcacaatacaccctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccatt |
41901057 |
T |
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| Q |
166 |
acctacaaagcatgtagaatatccacaatcaaagtacaccccagaacatgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaa |
265 |
Q |
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| T |
41901056 |
acctacaaagcatgtagaatatccacaatcaaagtacacccctgaacatgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaa |
41900957 |
T |
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| Q |
266 |
tcctcaccacctccaaagtatgcaaaatcaccacaat |
302 |
Q |
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| T |
41900956 |
tccccaccacctccaaagtatgcaaaatatccacaat |
41900920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 131 - 292
Target Start/End: Complemental strand, 41901307 - 41901146
Alignment:
| Q |
131 |
aaattaactccattatataaacacaaatctccaccacctacaaagcatgtagaatatccacaatcaaagtacaccccagaacatgcaaaacattcacatc |
230 |
Q |
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| T |
41901307 |
aaattaactccattgtataaacacaaatctccactctctacgaagcatgcagaatatccacaatcaaagtacaccccaaaacatgcaaaacattcacatc |
41901208 |
T |
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| Q |
231 |
cctatccaaaattaactccaatatatacatacaaatcctcaccacctccaaagtatgcaaaa |
292 |
Q |
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| T |
41901207 |
cctatcccaaattaactccattatatgcatataaatctccaccacctccaaaatatgcaaaa |
41901146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 302
Target Start/End: Complemental strand, 41901010 - 41900812
Alignment:
| Q |
104 |
catgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccaccacctacaaagcatgtagaatatccacaatcaaagtaca |
203 |
Q |
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| T |
41901010 |
catgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaatccccaccacctccaaagtatgcaaaatatccacaatcaaaataca |
41900911 |
T |
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| Q |
204 |
ccccagaacatgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaatcctcaccacctccaaagtatgcaaaatcaccacaat |
302 |
Q |
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| T |
41900910 |
cctcacatcatgcaaaacactcacacctctaccccaaattaactcaattatatacatacaaatccccaccacctccaaagtatgcaaaatatccacaat |
41900812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 302
Target Start/End: Complemental strand, 41900904 - 41900704
Alignment:
| Q |
102 |
atcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccaccacctacaaagcatgtagaatatccacaatcaaagta |
201 |
Q |
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| T |
41900904 |
atcatgcaaaacactcacacctctaccccaaattaactcaattatatacatacaaatccccaccacctccaaagtatgcaaaatatccacaatcacaata |
41900805 |
T |
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| Q |
202 |
caccccagaacatgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaatcctcaccacctccaaagtatgcaaaatcaccacaa |
301 |
Q |
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| T |
41900804 |
taccccacatcatgcaaaacactcacacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaaaatatccacaa |
41900705 |
T |
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| Q |
302 |
t |
302 |
Q |
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| T |
41900704 |
t |
41900704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 276
Target Start/End: Complemental strand, 41900815 - 41900622
Alignment:
| Q |
83 |
caatcacaatacatcctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccaccacctacaaagcatgtag |
182 |
Q |
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||||||||||| | || | |||||||||||||||| ||||||||||| ||||||||||||||||||| | | ||||||||||| ||| |||| |||| | |
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| T |
41900815 |
caatcacaatataccccacatcatgcaaaacactcacacctctaccccaaattaactccattatatacatataaatctccacctcctccaaaacatgcaa |
41900716 |
T |
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| Q |
183 |
aatatccacaatcaaagtacaccccagaacatgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaatcctcaccacc |
276 |
Q |
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|||||||||||||| | ||||||||| | ||||||||||| |||| | ||| || |||||| ||||| |||||||||||||||| ||||||| |
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| T |
41900715 |
aatatccacaatcacaatacaccccacatcatgcaaaacacgcacacctctaccccaaattagctccattatatacatacaaatctccaccacc |
41900622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 267
Target Start/End: Complemental strand, 41901226 - 41901063
Alignment:
| Q |
104 |
catgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatctccaccacctacaaagcatgtagaatatccacaatcaaagtaca |
203 |
Q |
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||||||||||| || || | ||| || |||||||||||||||||| | | ||||||||||||||| |||| ||| | || | ||||||||| | |||| |
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| T |
41901226 |
catgcaaaacattcacatccctatcccaaattaactccattatatgcatataaatctccaccacctccaaaatatgcaaaacacccacaatcacaataca |
41901127 |
T |
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| Q |
204 |
ccccagaacatgcaaaacattcacatccctatccaaaattaactccaatatatacatacaaatc |
267 |
Q |
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| T |
41901126 |
ccctatatcatgcaaaacactcgcacctctaccctaaattaactccattatataaacacaaatc |
41901063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 191
Target Start/End: Complemental strand, 41901391 - 41901358
Alignment:
| Q |
158 |
tctccaccacctacaaagcatgtagaatatccac |
191 |
Q |
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| T |
41901391 |
tctccaccatctacaaagcatgtagaatatccac |
41901358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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