View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_114 (Length: 300)
Name: NF0908_low_114
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_114 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 52 - 300
Target Start/End: Complemental strand, 1699547 - 1699298
Alignment:
| Q |
52 |
gatgtcgaataatatagttaagttaggcatgacctgaatggtcaaccttaactatgcatggccacatgatttgaccatc-ttacgggtctgtagtcaacc |
150 |
Q |
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| T |
1699547 |
gatgttgaataatatagttaagttaggcatgacctaaatggtcaaccttaactaggcatggccacatgatttgaccatccttacgggtctgtagtcaacc |
1699448 |
T |
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| Q |
151 |
aagtgtcgaatctattaaggcatatatatttaatcttcgtaggattgacatgtattagtccataagctatcaagcacatggtttgtttaaacctagacat |
250 |
Q |
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| T |
1699447 |
aagtgtcaaatctattaaggcatatatatttaatcttcgtaggattgacatgtcttagtccataagctatcaagcacatggtctgtttaaacctagacat |
1699348 |
T |
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| Q |
251 |
ttgttgtctctaaggccagtttgtactagtaccacgatgaacaaaaatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1699347 |
ttgttgtctctaaggccagtttgtactagtaccacgatgaacaaaaatat |
1699298 |
T |
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