View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_115 (Length: 300)
Name: NF0908_low_115
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_115 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 30259939 - 30260195
Alignment:
| Q |
9 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa |
108 |
Q |
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| T |
30259939 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacta |
30260034 |
T |
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| Q |
109 |
aatcaaaattgaccaaactaatagcacacacagtataatgcaaccatttcctcagcatcacataatgtatgtttaatttgggatggcccatagacatgtg |
208 |
Q |
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| T |
30260035 |
aatcaaaattgaccaaactaatagcacacgcagtataatgcaaccatttcctcagcatcacataatgtatgtttaatttggaatggcccatagacatgtg |
30260134 |
T |
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| Q |
209 |
gcttgatcggtcatattaacccaaatcttaagtcaaacttgctctaatattattattagag |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30260135 |
gcttgatcggtcatattaacccaaatcttaagtcaaacttgctctaatattattattagag |
30260195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 269
Target Start/End: Complemental strand, 29448657 - 29448401
Alignment:
| Q |
9 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||| | || ||||||| |
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| T |
29448657 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacaa |
29448562 |
T |
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| Q |
109 |
aatcaaaattgaccaaactaatagcacacacagtataatgcaaccatttcctcagcatcacataatgtatgtttaatttgggatggcccatagacatgtg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29448561 |
aatcaaaattgaccaaactaatagcacacacagtataatgcaaccatttcctcagcatcacataatgtatgtttaatttgggatggcccatagacatgtg |
29448462 |
T |
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| Q |
209 |
gcttgatcggtcatattaacccaaatcttaagtcaaacttgctctaatattattattagag |
269 |
Q |
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||||||||||||||||||| | |||| | |||||||| ||||||||||||||||||||||| |
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| T |
29448461 |
gcttgatcggtcatattaatctaaatttcaagtcaaagttgctctaatattattattagag |
29448401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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