View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_117 (Length: 298)
Name: NF0908_low_117
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_117 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30272221 - 30271953
Alignment:
| Q |
1 |
ctgcaatgtctattgatttatgcaaaattggtttgcgaaactaacatcgaaacattcattttcatgcagcacattttatacaggcagaaggaacaattca |
100 |
Q |
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| T |
30272221 |
ctgcaatgtctattgatttatgcaaaattggtttgcgaaactaacattgaaacattcattttcatgcagcacattttatacaggcagaaggaacaattca |
30272122 |
T |
|
| Q |
101 |
gtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgtatttgaatccaacctttttactctacaatttagtgatggagt |
200 |
Q |
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| T |
30272121 |
gtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgtatttgaatccaacctttttactctacaatttagtgatggagt |
30272022 |
T |
|
| Q |
201 |
tttctattgtcacaaagtttatgttacttataattggttcttcacattttccattaggtgactgatagg |
269 |
Q |
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| T |
30272021 |
tttctattgtcacaaagtttatgttacttataattggttcttcacattttccattaggtgactgatagg |
30271953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 51 - 225
Target Start/End: Original strand, 29359342 - 29359515
Alignment:
| Q |
51 |
aacattcattttcatgcagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgca |
150 |
Q |
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| T |
29359342 |
aacattcattttcatgcagcacattttatgcaggcagaaggaacaattcagtaatggtgttggttatagttggattgacgaccttaaagctcattgtgca |
29359441 |
T |
|
| Q |
151 |
aaacatgtatttgaatccaacctttttactctacaatttagtgatggagttttctattgtcacaaagtttatgtt |
225 |
Q |
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| T |
29359442 |
aaacatgta-ttgaatccaacctttttactctacaatttagtgatggatttttctattgtcacaaaatttgtgtt |
29359515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 29360224 - 29360264
Alignment:
| Q |
228 |
ttataattggttcttcacattttccattaggtgactgatag |
268 |
Q |
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| T |
29360224 |
ttataattggttcttgacattttccaataggtgactgatag |
29360264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 159
Target Start/End: Complemental strand, 25964815 - 25964718
Alignment:
| Q |
62 |
tcatgcagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatggccttaaagctcatgctgcaaaacatgta |
159 |
Q |
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| T |
25964815 |
tcatgcagcacattttatatagacagaaggaacagttcagtgatggagttggctatggctggattgatggaattaaggaccatgctgcaaaacatgta |
25964718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 39545999 - 39546063
Alignment:
| Q |
67 |
cagcacattttatacaggcagaaggaacaattcagtgatggtgttggttatagttggattgatgg |
131 |
Q |
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| T |
39545999 |
cagcacatattgtacaggcagaaggaacagttcagtgatggtgtcggatacagttggattgatgg |
39546063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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