View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_121 (Length: 295)
Name: NF0908_low_121
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_121 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 285
Target Start/End: Complemental strand, 31202654 - 31202373
Alignment:
| Q |
4 |
atcttatacttattagttgaatgaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccattactattgactattcatttc |
103 |
Q |
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| T |
31202654 |
atcttatacttattagttgaatgaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccattactattgacttttcatttc |
31202555 |
T |
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| Q |
104 |
attaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcatt |
203 |
Q |
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| T |
31202554 |
attaagtcatagagtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcatt |
31202455 |
T |
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| Q |
204 |
gatttcatttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccctttg |
285 |
Q |
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| T |
31202454 |
gatttcatttattccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccttttg |
31202373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 31222185 - 31221926
Alignment:
| Q |
27 |
aaaagcagaaaaaatgaaagtacacgggcccttacttaaatttt-gtctatttcccattactattgactattcatttcattaagtcatagagtggtatat |
125 |
Q |
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| T |
31222185 |
aaaagcaggaaaaatgaaagtaaacgggcccttacttaaatttttgtctatttcgcattactatcgacttttcatttcattaactcataaagtggtctat |
31222086 |
T |
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| Q |
126 |
tttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttcatttattccattcact |
225 |
Q |
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| T |
31222085 |
tttccatatatctctttccaggaacgcatctcttgctacaattaattgcttaatataacccttacacattcatggattgatttcatttattccattcact |
31221986 |
T |
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| Q |
226 |
tgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccctttg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31221985 |
tgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccttttg |
31221926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 31183616 - 31183347
Alignment:
| Q |
17 |
tagttgaatgaaaa-gcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcccattactattgactattcatttcattaagtcatag |
115 |
Q |
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| T |
31183616 |
tagttgaatgaaaaagcagaaaaaatgaaagtacacgggcccttacttaaattttgtctatttcacattactattgacttttcatttcattaagtcatag |
31183517 |
T |
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| Q |
116 |
agtggtatattttccatatatctctttccaggaacgtatctcttgctacaattaattgcttaatataacccttacacattcatgcattgatttca-ttta |
214 |
Q |
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| T |
31183516 |
agtggtctattttccatatatctctttccgggaacgtatctcatgctacaa-taattgcttaatataacccttacactttcaaccactgatttcattttc |
31183418 |
T |
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| Q |
215 |
ttccattcacttgtttcaaatatgaagcttatcatgaacacgtctttgcatcttttgtttctttccctttg |
285 |
Q |
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|| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
31183417 |
tttcattcacttgtttcaaatatgaagcctatcatgaacaagtctttgcatcttttgtttctttccttttg |
31183347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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