View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0908_low_122 (Length: 295)

Name: NF0908_low_122
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0908_low_122
NF0908_low_122
[»] chr8 (8 HSPs)
chr8 (69-195)||(20056983-20057110)
chr8 (69-195)||(42667425-42667552)
chr8 (68-195)||(45215442-45215570)
chr8 (66-192)||(20056546-20056673)
chr8 (69-192)||(45215878-45216002)
chr8 (70-192)||(42667862-42667985)
chr8 (107-192)||(22970234-22970320)
chr8 (70-114)||(28618952-28618996)
[»] chr5 (7 HSPs)
chr5 (69-195)||(7933178-7933305)
chr5 (70-195)||(6013981-6014106)
chr5 (70-192)||(6013547-6013670)
chr5 (69-192)||(7932744-7932868)
chr5 (72-179)||(42991640-42991747)
chr5 (89-129)||(28559234-28559274)
chr5 (89-129)||(25456334-25456374)
[»] chr2 (5 HSPs)
chr2 (68-195)||(42847349-42847477)
chr2 (92-195)||(39641655-39641759)
chr2 (72-192)||(42847767-42847888)
chr2 (68-192)||(39641221-39641346)
chr2 (89-129)||(25895214-25895254)
[»] chr3 (7 HSPs)
chr3 (70-192)||(52288353-52288476)
chr3 (71-192)||(3377009-3377131)
chr3 (68-185)||(53583823-53583941)
chr3 (68-128)||(3382500-3382560)
chr3 (152-195)||(52288015-52288058)
chr3 (137-192)||(3382464-3382519)
chr3 (89-129)||(26976375-26976415)
[»] chr6 (12 HSPs)
chr6 (70-192)||(12341195-12341318)
chr6 (71-192)||(5238892-5239014)
chr6 (137-192)||(22974012-22974067)
chr6 (137-192)||(23814333-23814388)
chr6 (73-191)||(12340775-12340894)
chr6 (71-192)||(22972859-22972980)
chr6 (71-192)||(23815419-23815540)
chr6 (70-123)||(5195638-5195691)
chr6 (66-127)||(10356562-10356623)
chr6 (137-192)||(5195677-5195733)
chr6 (89-129)||(21598504-21598544)
chr6 (89-129)||(21598744-21598784)
[»] chr4 (5 HSPs)
chr4 (73-195)||(40488320-40488442)
chr4 (71-192)||(40487888-40488010)
chr4 (89-129)||(41083352-41083392)
chr4 (89-129)||(45038414-45038454)
chr4 (89-129)||(46196169-46196209)
[»] scaffold0246 (1 HSPs)
scaffold0246 (71-192)||(25827-25949)
[»] scaffold0279 (1 HSPs)
scaffold0279 (89-129)||(1233-1273)
[»] chr7 (1 HSPs)
chr7 (89-129)||(27576629-27576669)
[»] chr1 (1 HSPs)
chr1 (89-129)||(34173317-34173357)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 20057110 - 20056983
Alignment:
Q  69 taggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaacac 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||    
T  20057110 taggcttaattacaccacatgtcctttaagtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataagtcctttaactttgtaacac 20057011  T
Q  168 tgtgcaactaagtccttccgttaacaaa 195  Q
    ||||||||||||||||||||||||||||    
T  20057010 tgtgcaactaagtccttccgttaacaaa 20056983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 42667425 - 42667552
Alignment:
Q  69 taggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacac 167  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| ||||||||||||||||||||    
T  42667425 taggcttaattacatcacatgtcctttaagtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagatatgtcctttaactttgtaacac 42667524  T
Q  168 tgtgcaactaagtccttccgttaacaaa 195  Q
    ||||||||||||||||||||||||||||    
T  42667525 tgtgcaactaagtccttccgttaacaaa 42667552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 45215442 - 45215570
Alignment:
Q  68 ataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaaca 166  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||        |||||| |||||||||||||||||||||||    
T  45215442 ataggcttaattacaccacatgtcctttaagtttgacgtttgtaatagataggtcatttaagtttgttttgtaacatataggtcctttaactttgtaaca 45215541  T
Q  167 ctgtgcaactaagtccttccgttaacaaa 195  Q
     ||||||||||||| ||||| ||||||||    
T  45215542 ttgtgcaactaagttcttccattaacaaa 45215570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 20056546 - 20056673
Alignment:
Q  66 aaataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaa 164  Q
    |||| ||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  20056546 aaattggcttaattacaccacgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaa 20056645  T
Q  165 cactgtgcaactaagtccttccgttaac 192  Q
    || | | |||||||||||||||||||||    
T  20056646 cagtatacaactaagtccttccgttaac 20056673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 45216002 - 45215878
Alignment:
Q  69 taggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacac 167  Q
    ||||||||||||||||||  |||||||| ||||| |||||||||||||| |||||||||||        ||||||||||||||||||||||||||||||     
T  45216002 taggcttaattacaccacgggtcctttatgtttgacgtttgtaacagatgggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacag 45215903  T
Q  168 tgtgcaactaagtccttccgttaac 192  Q
    ||| | |||||||||||||||||||    
T  45215902 tgtacgactaagtccttccgttaac 45215878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 42667985 - 42667862
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaacact 168  Q
    |||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||| |    
T  42667985 aggcttaattacaccacgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcatttaactttgtaacagt 42667886  T
Q  169 gtgcaactaagtccttccgttaac 192  Q
     | |||||||||||||||||||||    
T  42667885 atacaactaagtccttccgttaac 42667862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 22970320 - 22970234
Alignment:
Q  107 ttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgttaac 192  Q
    |||||||||||||||||||||||        |||||| ||| ||||||||||||||||||| ||| ||| |||||||||||||||||    
T  22970320 ttgtaacagataggtcctttaagtttgttttgtaacaaatatgtcctttaactttgtaacagtgtacaaataagtccttccgttaac 22970234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 114
Target Start/End: Complemental strand, 28618996 - 28618952
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaaca 114  Q
    ||||| |||||||||| |||| |||||||||||| ||||||||||    
T  28618996 aggctgaattacaccagatgttctttaagtttgcggtttgtaaca 28618952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 7933305 - 7933178
Alignment:
Q  69 taggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacac 167  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||||    
T  7933305 taggcttaattacaccacatgtcctttaagtttgacgtttgtaacagataggtcatttaagtttgttttgtaacagataggtcctttaactttgtaacac 7933206  T
Q  168 tgtgcaactaagtccttccgttaacaaa 195  Q
    ||||||||||||||||||||||||||||    
T  7933205 tgtgcaactaagtccttccgttaacaaa 7933178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 70 - 195
Target Start/End: Complemental strand, 6014106 - 6013981
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacact 168  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||    
T  6014106 aggcttaattacaccacatgtcctttaagtttgac-tttgtaacagataggtcctttaagtttgttttgtaacagataagtcctttaactttgtaacact 6014008  T
Q  169 gtgcaactaagtccttccgttaacaaa 195  Q
    |||||||||||||||||||||||||||    
T  6014007 gtgcaactaagtccttccgttaacaaa 6013981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 6013547 - 6013670
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaacact 168  Q
    |||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||| | |    
T  6013547 aggcttaattacaccacgagtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaatagt 6013646  T
Q  169 gtgcaactaagtccttccgttaac 192  Q
     | |||||||||||||||||||||    
T  6013647 atacaactaagtccttccgttaac 6013670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 192
Target Start/End: Original strand, 7932744 - 7932868
Alignment:
Q  69 taggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacac 167  Q
    |||| ||||||||||||   |||||||| ||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||     
T  7932744 taggtttaattacaccatgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacag 7932843  T
Q  168 tgtgcaactaagtccttccgttaac 192  Q
    | | |||||||||||||||||||||    
T  7932844 tatacaactaagtccttccgttaac 7932868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 42991640 - 42991747
Alignment:
Q  72 gcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaacactgt 170  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||        ||||||||||| | ||||||||||||||||||||    
T  42991640 gcttaattacaccacaggtcctttaagtttgacgtttgtaacagatatgtcctttaagtttgttttgtaacagatagat-ctttaactttgtaacactgt 42991738  T
Q  171 gcaactaag 179  Q
    |||||||||    
T  42991739 gcaactaag 42991747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 28559234 - 28559274
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  28559234 gtcctttaagtttgacgtttgtaacagattggtcctttaag 28559274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 25456334 - 25456374
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  25456334 gtcctttaagtttgaggtttgtaacagattggtcctttaag 25456374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 42847349 - 42847477
Alignment:
Q  68 ataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaaca 166  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||        ||||||||||||||||||||||||||||||    
T  42847349 ataggcttaattacaccacatgtcctttaagtttgacgtttgtaacagatagatcttttaagtttgttttgtaacagataggtcctttaactttgtaaca 42847448  T
Q  167 ctgtgcaactaagtccttccgttaacaaa 195  Q
    |||||||||||||||||||||||||||||    
T  42847449 ctgtgcaactaagtccttccgttaacaaa 42847477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 92 - 195
Target Start/End: Complemental strand, 39641759 - 39641655
Alignment:
Q  92 ctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgtta 190  Q
    ||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39641759 ctttaagtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgtta 39641660  T
Q  191 acaaa 195  Q
    |||||    
T  39641659 acaaa 39641655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 42847888 - 42847767
Alignment:
Q  72 gcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactgt 170  Q
    |||||||||||||||  |||||||| ||||| ||||||||||||||||||| ||||||        |||||||||||||||||||||||||||||| |||    
T  42847888 gcttaattacaccacgggtcctttatgtttgacgtttgtaacagataggtcttttaagtttgttttgtaacagataggtcctttaactttgtaacagtgt 42847789  T
Q  171 gcaactaagtccttccgttaac 192  Q
     |||||||||||||||||||||    
T  42847788 acaactaagtccttccgttaac 42847767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 39641221 - 39641346
Alignment:
Q  68 ataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaaca 166  Q
    |||||||||||||||||||  |||||||| ||||| | ||||||||||||||||||||||||        |||| |||||||||||||||||||||||||    
T  39641221 ataggcttaattacaccacgggtcctttatgtttgacatttgtaacagataggtcctttaagtttgttttgtaagagataggtcctttaactttgtaaca 39641320  T
Q  167 ctgtgcaactaagtccttccgttaac 192  Q
     | | |||||||||||||||||||||    
T  39641321 gtatacaactaagtccttccgttaac 39641346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 25895254 - 25895214
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  25895254 gtcctttaagtttgaggtttgtaacagattggtcctttaag 25895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 52288476 - 52288353
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacact 168  Q
    |||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| |    
T  52288476 aggcttaattacaccacgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacagt 52288377  T
Q  169 gtgcaactaagtccttccgttaac 192  Q
    || |||||||||||||||||||||    
T  52288376 gtacaactaagtccttccgttaac 52288353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 3377009 - 3377131
Alignment:
Q  71 ggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaacactg 169  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||| | ||    
T  3377009 ggcttaattacaccacaggtcctttaagtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaaaagtg 3377108  T
Q  170 tgcaactaagtccttccgttaac 192  Q
    | ||| | |||| ||||||||||    
T  3377109 tacaatttagtcattccgttaac 3377131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 185
Target Start/End: Original strand, 53583823 - 53583941
Alignment:
Q  68 ataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaaca 166  Q
    |||||||||||||||||||  |||||||| ||||| ||||||||||| ||||||| ||||||        |||||| ||| ||||||||||||| ||| |    
T  53583823 ataggcttaattacaccacgggtcctttatgtttgacgtttgtaacatataggtcatttaagtttgttttgtaacaaataagtcctttaactttataata 53583922  T
Q  167 ctgtgcaactaagtccttc 185  Q
     ||||||||||||||||||    
T  53583923 gtgtgcaactaagtccttc 53583941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 3382560 - 3382500
Alignment:
Q  68 ataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaa 128  Q
    ||||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||    
T  3382560 ataggcttaattacatcacaggttctttaagtttgacgtttgtaacagataggtcctttaa 3382500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 52288015 - 52288058
Alignment:
Q  152 tttaactttgtaacactgtgcaactaagtccttccgttaacaaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  52288015 tttaactttgtaacactgtgcaactaagtccttccgttaacaaa 52288058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 3382519 - 3382464
Alignment:
Q  137 gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgttaac 192  Q
    |||||||||||||||||||||||||||||| ||| ||| | || ||||||||||||    
T  3382519 gtaacagataggtcctttaactttgtaacagtgtacaatttagcccttccgttaac 3382464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 26976375 - 26976415
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  26976375 gtcctttaagtttgaggtttgtaacagataggtcctctaag 26976415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 70 - 192
Target Start/End: Complemental strand, 12341318 - 12341195
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacact 168  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||        ||||||| |||||| |||||||| ||||||||    
T  12341318 aggcctaattacaccacaagtcctttaagtttgacgtttgtaacaaataggtcctttaagtttgttttgtaacaggtaggtcatttaacttcgtaacact 12341219  T
Q  169 gtgcaactaagtccttccgttaac 192  Q
    ||||||||||||||||||||||||    
T  12341218 gtgcaactaagtccttccgttaac 12341195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 5239014 - 5238892
Alignment:
Q  71 ggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaag-nnnnnnngtaacagataggtcctttaactttgtaacactg 169  Q
    ||||||||||||||||  ||||||||| |||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||    
T  5239014 ggcttaattacaccacgggtcctttaaatttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacagtg 5238915  T
Q  170 tgcaactaagtccttccgttaac 192  Q
    | ||| | || ||||||||||||    
T  5238914 tacaatttagcccttccgttaac 5238892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 22974067 - 22974012
Alignment:
Q  137 gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgttaac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22974067 gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgttaac 22974012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 23814333 - 23814388
Alignment:
Q  137 gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgttaac 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23814333 gtaacagataggtcctttaactttgtaacactgtgcaactaagtccttccgttaac 23814388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 191
Target Start/End: Original strand, 12340775 - 12340894
Alignment:
Q  73 cttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactgtg 171  Q
    |||||||||||||   |||||||| ||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||| | |||     
T  12340775 cttaattacaccatgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaaaagtgta 12340874  T
Q  172 caactaagtccttccgttaa 191  Q
    |||| |||||||||||||||    
T  12340875 caaccaagtccttccgttaa 12340894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 22972859 - 22972980
Alignment:
Q  71 ggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactg 169  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||||| ||| ||||||        |||||||||||||| ||||||||||||||| ||    
T  22972859 ggcttaattacaccacgagtcctttatgtttgacgtttgtaacagatatgtc-tttaagtttgttttgtaacagataggtcatttaactttgtaacagtg 22972957  T
Q  170 tgcaactaagtccttccgttaac 192  Q
    | |||||||||||||||||||||    
T  22972958 tacaactaagtccttccgttaac 22972980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 71 - 192
Target Start/End: Complemental strand, 23815540 - 23815419
Alignment:
Q  71 ggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactg 169  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||||| ||| ||||||        |||||||||||||| ||||||||||||||| ||    
T  23815540 ggcttaattacaccacgagtcctttatgtttgacgtttgtaacagatatgtc-tttaagtttgttttgtaacagataggtcatttaactttgtaacagtg 23815442  T
Q  170 tgcaactaagtccttccgttaac 192  Q
    | |||||||||||||||||||||    
T  23815441 tacaactaagtccttccgttaac 23815419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 5195638 - 5195691
Alignment:
Q  70 aggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcc 123  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  5195638 aggcttaattacaccacaggtcctttaagtttgacgtttgtaacagataggtcc 5195691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 10356623 - 10356562
Alignment:
Q  66 aaataggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtccttta 127  Q
    ||||||||| ||||||| |  | |||||||||||||| |||||||||||||| |||||||||    
T  10356623 aaataggctaaattacatctgaggtcctttaagtttgacgtttgtaacagattggtccttta 10356562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 5195677 - 5195733
Alignment:
Q  137 gtaacagataggtcc-tttaactttgtaacactgtgcaactaagtccttccgttaac 192  Q
    ||||||||||||||| ||||||||||||| | ||| ||| | |||||||||||||||    
T  5195677 gtaacagataggtccctttaactttgtaaaagtgtacaatttagtccttccgttaac 5195733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 21598504 - 21598544
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  21598504 gtcctttaagtttgaggtttgtaacagattggtcctttaag 21598544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 21598784 - 21598744
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  21598784 gtcctttaagtttgaggtttgtaacagattggtcctttaag 21598744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 40488442 - 40488320
Alignment:
Q  73 cttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactgtg 171  Q
    ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||        |||||| ||| ||| ||||||||||||||||||||    
T  40488442 cttaattacaccacatgtc-tttaagtttgacgtttgtaacaaataggtcctttaagtttgttttgtaacaaatatgtcatttaactttgtaacactgtg 40488344  T
Q  172 caactaagtccttccgttaacaaa 195  Q
    ||||||||||||||||||||||||    
T  40488343 caactaagtccttccgttaacaaa 40488320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 40487888 - 40488010
Alignment:
Q  71 ggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactg 169  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||    
T  40487888 ggcttaattacaccacgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacagtg 40487987  T
Q  170 tgcaactaagtccttccgttaac 192  Q
    | |||||||||| ||||||||||    
T  40487988 tacaactaagtctttccgttaac 40488010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 41083392 - 41083352
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  41083392 gtcctttaagtttgaggtttgtaacagattggtcctttaag 41083352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 45038454 - 45038414
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  45038454 gtcctttaagtttgaggtttgtaacagattggtcctttaag 45038414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 46196169 - 46196209
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    |||||||||||||| ||||||||||| || |||||||||||    
T  46196169 gtcctttaagtttgacgtttgtaacaaattggtcctttaag 46196209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 25827 - 25949
Alignment:
Q  71 ggcttaattacaccacatgtcctttaagtttgccgtttgtaacagataggtcctttaagnnnnnnn-gtaacagataggtcctttaactttgtaacactg 169  Q
    ||||||||||||||||  |||||||| ||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||| ||    
T  25827 ggcttaattacaccacgggtcctttatgtttgacgtttgtaacagataggtcctttaagtttgttttgtaacagataggtcctttaactttgtaacagtg 25926  T
Q  170 tgcaactaagtccttccgttaac 192  Q
    | |||||||||| ||||||||||    
T  25927 tacaactaagtctttccgttaac 25949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 1273 - 1233
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  1273 gtcctttaagtttgacgtttgtaacagattggtcctttaag 1233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 27576669 - 27576629
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  27576669 gtcctttaagtttgacgtttgtaacagattggtcctttaag 27576629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 34173317 - 34173357
Alignment:
Q  89 gtcctttaagtttgccgtttgtaacagataggtcctttaag 129  Q
    ||||||||||||||  ||||||||||||| |||||||||||    
T  34173317 gtcctttaagtttgatgtttgtaacagattggtcctttaag 34173357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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