View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0908_low_133 (Length: 285)
Name: NF0908_low_133
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_133 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 47 - 222
Target Start/End: Original strand, 48134888 - 48135063
Alignment:
| Q |
47 |
aatattatttgaaaactaatttcattaaaaaatgtaaatgaaattagttccgactagttagttttcttattaattatagtactttagaaagtcggcaaag |
146 |
Q |
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| T |
48134888 |
aatattatttgaaaactaatttcattaaaaaatgtaaatgaaattagttccgactagttagttttcttattaattatagtactttagaaagtcggcaaag |
48134987 |
T |
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| Q |
147 |
tagcacggcataaattatgaaccgaatgaaaagggaaagaaaaaggacagacatattagttgagaaagcagaaccg |
222 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48134988 |
tagcacatcataaattatgaaccgaatgaaaagggaaagaaaaaggacagacatattagttgagaaagcagaaccg |
48135063 |
T |
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