View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_136 (Length: 282)
Name: NF0908_low_136
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_136 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 16052724 - 16052859
Alignment:
| Q |
102 |
gcttacattcgagatcagagggagtacatgacaagaaatccaccgtataatataaaaaccttatttttcatc--atcaccaatactacaacattcagtag |
199 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
16052724 |
gcttacatttgagaccggagggagtacatgacaagaaatccaccgtataatataaaaaccttatttttcatcatatcaccaatactacaacattcagtag |
16052823 |
T |
|
| Q |
200 |
taccaaggatcatagtctccgccaaagtcatattca |
235 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16052824 |
taccaagaatcatagtctccgccaaagtcatattca |
16052859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 205
Target Start/End: Complemental strand, 15936469 - 15936391
Alignment:
| Q |
127 |
acatgacaagaaatccaccgtataatataaaaaccttatttttcatcatcaccaatactacaacattcagtagtaccaa |
205 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
15936469 |
acatgacaagaaattcacagtataatataaaaactttatttttcatcatcactaagactacaacattcactagtaccaa |
15936391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 16052581 - 16052643
Alignment:
| Q |
9 |
caacaatatcctttaaaacatcagtagcatgagtatcatcaaggatcacgataaatacttcat |
71 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16052581 |
caacaaaatcctttaaaacatcattagcatgagtatcatcaaggatcacaataaatacttcat |
16052643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1 times since January 2019
Visitors: 6699