View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0908_low_139 (Length: 280)
Name: NF0908_low_139
Description: NF0908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0908_low_139 |
 | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
| [»] scaffold0640 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 25)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 19399692 - 19399959
Alignment:
| Q |
1 |
ataacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399692 |
ataacaaactacagggaccaattcaagatgaaataggtcaactagcacatattgaatatcttggtcttgcttggaacatgttaagtggtttcattccttc |
19399791 |
T |
|
| Q |
101 |
aactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399792 |
aactctaggaaacctctcttccttaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagttta |
19399891 |
T |
|
| Q |
201 |
gattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19399892 |
gattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
19399959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 18146814 - 18147086
Alignment:
| Q |
1 |
ataacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttc |
100 |
Q |
| |
|
||||||||||||| ||| |||||||| ||| |||||| ||||| ||||||||| |||| ||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
18146814 |
ataacaaactacacggatcaattccaaatggaataggccaacttgcacatattcaataccttgatctttcatggaacatgttaagtggtttcattccttc |
18146913 |
T |
|
| Q |
101 |
aactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagttta |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |||||||||||| |
|
|
| T |
18146914 |
aactctaggaaacctctcatccttaaattacttatggattggctctaataatttctctggtgcaatttcaaaattaactttttccaacctctctagttta |
18147013 |
T |
|
| Q |
201 |
gattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttcatctca |
273 |
Q |
| |
|
|||||||||||| |||||||||||| |||| ||||||| |||||||| ||||||||||| |||||||| |||| |
|
|
| T |
18147014 |
gattcactagacatgagtaattcaagttttgtattccaatttgatttggattgggttccaccttttcaactca |
18147086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 2 - 268
Target Start/End: Original strand, 19380878 - 19381144
Alignment:
| Q |
2 |
taacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttca |
101 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || | | |
|
|
| T |
19380878 |
taacaaattacagggactaattccagatgaaataggccaactagcacatattgaatatctggatcttgctaggaacatgttaagtggtttcataccatta |
19380977 |
T |
|
| Q |
102 |
actctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttag |
201 |
Q |
| |
|
||||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| |
|
|
| T |
19380978 |
actctaggaaacctctcatccttatatttgttatctattggctctaataatttctctggtgaaatttctaaattaactttttccaaactctctagtttag |
19381077 |
T |
|
| Q |
202 |
attcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19381078 |
attcgctagacttgagtaattcaaattttttattccaatttgatttggattgggttcctccttttca |
19381144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 19351378 - 19351644
Alignment:
| Q |
1 |
ataacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttc |
100 |
Q |
| |
|
||||| ||||||| ||| |||||||||||| |||| | |||||| || ||||| |||| ||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19351378 |
ataaccaactacaaggatcaattccagatggaataagccaactaccaaatattcaataccttgatctttcatggaacatgttaagtggtttcattccttc |
19351477 |
T |
|
| Q |
101 |
aactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttca-aatttacttttttccaaactctctagttt |
199 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||| ||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
19351478 |
aactctaggaaacctctcatccttaatttccttatcgattggctctaatcatttcactggtgaaatttcacaattt--ttttttccaaactctctagttt |
19351575 |
T |
|
| Q |
200 |
agattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||| | |||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19351576 |
agaatggctagacttgagtaattcaaattttgtattccaatttgatttggattgggttcctccttttca |
19351644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 60 - 268
Target Start/End: Original strand, 19375665 - 19375873
Alignment:
| Q |
60 |
cttgatcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctg |
159 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
19375665 |
cttgatctttcatcgaacatgttaagtggtttcattcctttaactctaggaaacctctcatccttaaatttgttatctattggctctaataatttctctg |
19375764 |
T |
|
| Q |
160 |
gtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcc |
259 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
19375765 |
gtgaaatttctaaattaactttttccaaactctctagtttagattcactagacttgagtaattcaaattttgtattccaatttgatttggattgggttcc |
19375864 |
T |
|
| Q |
260 |
tccttttca |
268 |
Q |
| |
|
||||||||| |
|
|
| T |
19375865 |
tccttttca |
19375873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 14896404 - 14896139
Alignment:
| Q |
3 |
aacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaa |
102 |
Q |
| |
|
||||| ||||| ||| ||||||||||| |||||| |||||| || ||||| || | ||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
14896404 |
aacaacctacaaggatcaattccagatagaatagggcaactaccaaatattcaacaccttgatctttcaatgaacatgttaagcggtttcattccttcaa |
14896305 |
T |
|
| Q |
103 |
ctctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttaga |
202 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
14896304 |
ctctaggaaacctctcatccttaatttccttatccattggctctaataatttctctgctgaaatttcaaatttaactttttccaaacactctagtttagt |
14896205 |
T |
|
| Q |
203 |
ttcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||||||||| |||||||||||||| || |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
14896204 |
ttcactagacatgagtaattcaaatgttgcattccaatttgatttggattgggttcctccttttca |
14896139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 18165158 - 18165407
Alignment:
| Q |
19 |
caattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctc |
118 |
Q |
| |
|
|||||||||||| |||||| |||||| | ||||| || ||||||||| | ||||||||||||| ||||| || ||||| ||||||||||||||||| |
|
|
| T |
18165158 |
caattccagatggaataggccaactaataaatattaaaggccttgatctttcagggaacatgttaagcggttttatcccttcgactctaggaaacctctc |
18165257 |
T |
|
| Q |
119 |
ttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagt |
218 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
18165258 |
atccttaaatgacttatctattggctctaataatttctctggtgaaatttcaaatttacattttgccaaactctccaatttagattcactagacttgagt |
18165357 |
T |
|
| Q |
219 |
aattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||||||||||| ||||||| |||| ||| |||||||||||||||||||| |
|
|
| T |
18165358 |
aattcaaattttgtattccaatttgctttggattgggttcctccttttca |
18165407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 18108496 - 18108690
Alignment:
| Q |
74 |
gaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaat |
173 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18108496 |
gaacatgtttagtggtctcattccttcaactgtaggaaacctctcttccttaaagcacttatttattggctctaataatttctctggcgaaatttcaaat |
18108595 |
T |
|
| Q |
174 |
ttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||| ||||||||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18108596 |
ttacatttttccaatctctctactttattttcactagacttgagtaattcaaattttgtattccagtttgatttggattgggttcctccttttca |
18108690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 16677221 - 16677470
Alignment:
| Q |
19 |
caattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16677221 |
caattccagatgaaataggtcaactagcacatattcaagaccttgatctttccatgaacatgttaagtggtttcattccttcaactctaggaaacctctc |
16677320 |
T |
|
| Q |
119 |
ttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagt |
218 |
Q |
| |
|
|| ||||||| ||||| |||||| |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
16677321 |
atctttaaattccttatctattggcaataatgatttctctggtgaagtttcaaatttaactttttccaaactctctagtttagatatactagacctgaga |
16677420 |
T |
|
| Q |
219 |
aattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
| | || | || ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
16677421 |
agattaagtgttgtattccaatttgatttggattgggttcctccatttca |
16677470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 19424677 - 19424938
Alignment:
| Q |
7 |
aactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactct |
106 |
Q |
| |
|
||||||| ||| ||||||| | | |||||| ||||||||||||||| || ||||||||| | || |||||||||||||| |||||||||||| | |
|
|
| T |
19424677 |
aactacaaggatcaattccgcacggaataggccaactagcacatattcaaagccttgatctttcaaacaatatgttaagtggtttaattccttcaacttt |
19424776 |
T |
|
| Q |
107 |
aggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattca |
206 |
Q |
| |
|
|||||||||||| || |||||| |||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||| | |
|
|
| T |
19424777 |
aggaaacctctcatcattaaatcacttatggattggctctaataaattctcaggtgaaatttcaaaattaactttttccaaactctctagtttagaagaa |
19424876 |
T |
|
| Q |
207 |
ctagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19424877 |
ctagacttgagtaattcaacttttgtattccaatttgatttggattgggttcctccttttca |
19424938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 74 - 268
Target Start/End: Original strand, 17949889 - 17950083
Alignment:
| Q |
74 |
gaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaat |
173 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17949889 |
gaacatgtttggtggtctcattccttcaactctaggaaacctctcatccttatattacttatctattggctctaataatttctctggtaaaatttcaaat |
17949988 |
T |
|
| Q |
174 |
ttacttttttccaaactctctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||| |||||||||| | | |||||||||| ||||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||| |
|
|
| T |
17949989 |
ttacatttttccaaattatttagtttagatgaactagacttgagtaattcaaattttgtaatccaatttgatttggattgggttcctccttttca |
17950083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 25463034 - 25463301
Alignment:
| Q |
1 |
ataacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttc |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||| |||||| |||||| || ||||| |||| ||||||||| | |||||||||| |||||| || |||| |
|
|
| T |
25463034 |
ataaccaattacagggaccaattccagatggaataggccaactaccaaatattcaataccttgatctttccattaacatgttaattggtttaatcccttt |
25463133 |
T |
|
| Q |
101 |
aactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagttta |
200 |
Q |
| |
|
|||| ||||||||||||| ||||||| || ||||| || ||||||||||| |||||||| | ||||||||| ||| ||| |||||||||| ||||||| |
|
|
| T |
25463134 |
aactataggaaacctctcatccttaacttccttatctatcggctctaataacttctctggggcaatttcaaaattaactttctccaaactctttagttta |
25463233 |
T |
|
| Q |
201 |
gattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| || |||||||| |||||||||||||||||||| |
|
|
| T |
25463234 |
gattcactagacttgagtaattcaacttttgtattacaatttgatttggattgggttcctccttttca |
25463301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 17727461 - 17727286
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17727461 |
attccttcaactctaggaaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactct |
17727362 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
17727361 |
ctagtttagattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctccttttca |
17727286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 18116041 - 18116216
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18116041 |
attccttcaactctaggaaatctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
18116140 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||||| || ||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
18116141 |
ctagtttagatcatctagacttgcgtaattcagattttgtaatccagattgatttggattgggttcctccctttca |
18116216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 19028690 - 19028515
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19028690 |
attccttcaactctaggaaacctctcatctttaattttcttatctattggttctaataatttctctggtgaaatttcaaatttaactttttccaaactct |
19028591 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
19028590 |
ctagtttagattcactacaattgagtaattcaaattttgcattccaatttgatttggattgggttcctccttttca |
19028515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 19393139 - 19393400
Alignment:
| Q |
7 |
aactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactct |
106 |
Q |
| |
|
||||||| ||| |||||| ||||| |||||| ||||| | |||| || |||| |||||| || | |||||||| |||||||| |||||||||||| | |
|
|
| T |
19393139 |
aactacaaggatcaattcaagatggaataggccaacttgaacatcttcaataccttgatgtttcgaaaaacatgttgagtggttttattccttcaacttt |
19393238 |
T |
|
| Q |
107 |
aggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattca |
206 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||| || ||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
|
|
| T |
19393239 |
aggaaacctctcatccttaaattacttatctattagcgataacaatttctctggtgaaatttcaaatttacatttttccaaactccatagtttagtttca |
19393338 |
T |
|
| Q |
207 |
ctagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||| ||||||||||||||| |||| |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
19393339 |
ctaaacttgagtaattcaatttttgaattccaatttgatttgaattgggttcctccttttca |
19393400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 18103422 - 18103597
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
18103422 |
attccctcaactctaggaaacctctcatccttaaattacttatttattggctctaataatttctctggtaaaatttcaaatttgcatttttccaaactct |
18103521 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| ||||||| |||||| | |||||||| ||||||||||| |
|
|
| T |
18103522 |
gtagtttagatgaactagacttgagtaactcaaattttgtattccaatttgatatggattgggtacctccttttca |
18103597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 275
Target Start/End: Original strand, 17942039 - 17942212
Alignment:
| Q |
102 |
actctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttag |
201 |
Q |
| |
|
||||||||||||||||| || ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
17942039 |
actctaggaaacctctcatcattaaattggttatttattggttctaataatttctctggtgaaatttcaaatttaacttttttcaaactctctagtttag |
17942138 |
T |
|
| Q |
202 |
attcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttcatctcact |
275 |
Q |
| |
|
| |||||||||||||||||||||| |||| ||||||| |||||||| |||||||||||||||||||| |||||| |
|
|
| T |
17942139 |
actcactagacttgagtaattcaagttttgtattccaatttgatttggattgggttcctccttttcaactcact |
17942212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 19334085 - 19334260
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
19334085 |
attccttcaactctaggaaacctctcttccttaaattacttatttattggctctaataatttctctggtgaaatttcaaaattaactttttccaaactct |
19334184 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|| ||||| || |||||| ||||| |||||||| || ||||||| |||||||| |||||| ||||||||||||| |
|
|
| T |
19334185 |
atactttaggtttgctagacatgagttattcaaatattgtattccaatttgatttggattggattcctccttttca |
19334260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 18016098 - 18016273
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| || ||||| |||||||||||||||||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
18016098 |
attccttcaactctaggaaacctgtcatccttaatttccttatcgattggctctaataatttctctggtgaaatttcacaattttttttttccaaactct |
18016197 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
18016198 |
ctagtttaaatcatttagacttgagtaattcaaattttgaattccaatttgatttggattgggttcctccttttca |
18016273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 93 - 267
Target Start/End: Original strand, 18144267 - 18144440
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18144267 |
attccttcaactccaggaa-cctctcttccttaatttacttatctattggctctaacaatttctctggtgaaatttcaaatttacatttttccaaactct |
18144365 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttc |
267 |
Q |
| |
|
||||||||| | |||| | |||| |||||| |||| ||||||| |||||||| |||| |||||||||||||| |
|
|
| T |
18144366 |
ctagtttagttgtactatagatgaggaattcacgttttgtattccaatttgatttggattaggttcctccttttc |
18144440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 106 - 268
Target Start/End: Original strand, 19437047 - 19437209
Alignment:
| Q |
106 |
taggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattc |
205 |
Q |
| |
|
||||||||||||| ||||||| |||| ||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
19437047 |
taggaaacctctcatccttaagttacctatctattggttctaataatttctctggtgaaatttcaaaattaactttttccaaactctctagtttagattg |
19437146 |
T |
|
| Q |
206 |
actagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|| |||||||| |||||||||||| ||||| | |||||| | |||||||||||||||||||| |
|
|
| T |
19437147 |
gctcgacttgagcaattcaaattttgtattcaaatttgatatggattgggttcctccttttca |
19437209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 19461608 - 19461712
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19461608 |
attccttcaactctaggaaacctctcttccctaaattacttatctattggctctaataatttctctggtgaaatttcaaatttacatttttccaaactct |
19461707 |
T |
|
| Q |
193 |
ctagt |
197 |
Q |
| |
|
||||| |
|
|
| T |
19461708 |
ctagt |
19461712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 90 - 268
Target Start/End: Original strand, 19414257 - 19414435
Alignment:
| Q |
90 |
ttcattccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaac |
189 |
Q |
| |
|
||||||| ||||||||||||||| ||| | |||||||||||||||| ||||| || ||||||||||||||| | |||| ||||||| ||||||||||| |
|
|
| T |
19414257 |
ttcattctttcaactctaggaaatctcccatccttaaattacttatctattggttcgaataatttctctggtaatattttaaatttatatttttccaaac |
19414356 |
T |
|
| Q |
190 |
tctctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||| | ||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
19414357 |
tctctagtttaaatcatctagacttgagtaattcaagttttgttttccaatttgatttggattgggttcccccttttca |
19414435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 105 - 268
Target Start/End: Original strand, 19464444 - 19464607
Alignment:
| Q |
105 |
ctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagatt |
204 |
Q |
| |
|
|||||||||||||| || |||||| |||||| || |||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
19464444 |
ctaggaaacctctcatctttaaatgacttatctatcggctctaacaatttctcaggtgaaatttcaaatttaactttttccaaactctctagtttacatt |
19464543 |
T |
|
| Q |
205 |
cactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||||||||||||||||||| | | ||| ||||||| |||||||||||||||||||| |
|
|
| T |
19464544 |
atttagacttgagtaattcaaattttgtctcccaaattgatttggattgggttcctccttttca |
19464607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 31 - 268
Target Start/End: Original strand, 15535547 - 15535784
Alignment:
| Q |
31 |
aaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctcttccttaaatta |
130 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15535547 |
aaataggccaactagcacatattcaatatcttgatctttctaggaacatgttaagttctttcattccttcaactctaggaaacctctcatccttaaattc |
15535646 |
T |
|
| Q |
131 |
cttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagtaattcaaatttt |
230 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||| || |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15535647 |
cttatctattggatctaataatttatctggtgcaaattcaaaattaactttttccaaactctctggtttagattcactagacttgagtaattcaaatttt |
15535746 |
T |
|
| Q |
231 |
ctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
||||||| ||| |||| |||||||||||||||||||| |
|
|
| T |
15535747 |
gtattccaattttatttggattgggttcctccttttca |
15535784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2710592 - 2710325
Alignment:
| Q |
1 |
ataacaaactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttc |
100 |
Q |
| |
|
||||| ||||||| |||||||||| |||||||||||| ||||||||| ||||| |||| ||||||||| | |||||||||||| |||||||||||||| |
|
|
| T |
2710592 |
ataaccaactacaaggaccaattcaagatgaaataggccaactagcatatattcaataccttgatctttccatgaacatgttaagcggtttcattccttc |
2710493 |
T |
|
| Q |
101 |
aactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagttta |
200 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||| |||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2710492 |
aactctaggaaacctctcatccttaaagtccttacttattggcactaatcatttttctggtgaaatttcaaatttaactttttccaaactctctagttta |
2710393 |
T |
|
| Q |
201 |
gattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
|||||||||||| |||||| ||||| || | ||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
2710392 |
gattcactagacgtgagtagttcaacttgtgtattccaatttgatttgaattgggttcctccttttca |
2710325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 4113 - 3853
Alignment:
| Q |
7 |
aactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactct |
106 |
Q |
| |
|
||||||| ||| || || || ||| |||||||||||||||| ||||| || | ||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
4113 |
aactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaagtggtttcattcctgtaactct |
4014 |
T |
|
| Q |
107 |
aggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattca |
206 |
Q |
| |
|
|||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
4013 |
aggaaacctctcatccttacattccttatctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaa |
3914 |
T |
|
| Q |
207 |
ctagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttc |
267 |
Q |
| |
|
||| ||||||||||||||||| || |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3913 |
ctatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctccttttc |
3853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 7 - 267
Target Start/End: Complemental strand, 3583 - 3323
Alignment:
| Q |
7 |
aactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactct |
106 |
Q |
| |
|
||||||| ||| || || || ||| |||||||||||||||| ||||| || | ||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
3583 |
aactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaagtggtttcattcctgtaactct |
3484 |
T |
|
| Q |
107 |
aggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattca |
206 |
Q |
| |
|
|||||||||||| |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
3483 |
aggaaacctctcatccttacattccttatctattggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaa |
3384 |
T |
|
| Q |
207 |
ctagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttc |
267 |
Q |
| |
|
||| ||||||||||||||||| || |||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3383 |
ctatacttgagtaattcaaatattgtattccgatttgatttggattgggttcctccttttc |
3323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 5393 - 5653
Alignment:
| Q |
7 |
aactacagggaccaattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactct |
106 |
Q |
| |
|
||||||| ||| || || || ||| |||||||||||||||| ||||| || | ||||||||| | ||||||||| |||||||||||||| |||||| |
|
|
| T |
5393 |
aactacaaggatcagtttcacatggaataggtcaactagcaaatattcaacaccttgatctttccatcaacatgttaggtggtttcattcctgtaactct |
5492 |
T |
|
| Q |
107 |
aggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattca |
206 |
Q |
| |
|
|||||||||||| |||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
5493 |
aggaaacctctcatccttacattccttatctactggctctaataatttctctggtgaaatttcaaatttaactttttccaaactctctagtttagatgaa |
5592 |
T |
|
| Q |
207 |
ctagacttgagtaattcaaattttctattccagtttgatttagattgggttcctccttttc |
267 |
Q |
| |
|
||| ||||||||||||||||| || |||| | |||||||| ||||||||||||||||||| |
|
|
| T |
5593 |
ctatacttgagtaattcaaatattgtatttcgatttgatttggattgggttcctccttttc |
5653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 266
Target Start/End: Complemental strand, 13666874 - 13666701
Alignment:
| Q |
93 |
attccttcaactctaggaaacctctcttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactct |
192 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
13666874 |
attccttcaactctaggaaacctctcatccttaaattacttatctattagctctaataatttctctggtgaaatttcaaatttaactttttctaaactct |
13666775 |
T |
|
| Q |
193 |
ctagtttagattcactagacttgagtaattcaaattttctattccagtttgatttagattgggttcctcctttt |
266 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| || ||||||| |||||||| |||||||||||||||||| |
|
|
| T |
13666774 |
ctagtttagacacactatgcttgagtaattcaaagcttgtattccaatttgatttggattgggttcctcctttt |
13666701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 8459550 - 8459799
Alignment:
| Q |
19 |
caattccagatgaaataggtcaactagcacatattgaatatcttgatcttgcttggaacatgttaagtggtttcattccttcaactctaggaaacctctc |
118 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
8459550 |
caattccgtatggaataggccaactagcacatattcaataccttgatctttccaaaaacatgttaagtggtttcattccttctactcttggaaacctctc |
8459649 |
T |
|
| Q |
119 |
ttccttaaattacttatggattggctctaataatttctctggtgaaatttcaaatttacttttttccaaactctctagtttagattcactagacttgagt |
218 |
Q |
| |
|
|||||| ||| ||||| |||||||| ||||| |||||| ||||||||||||| | ||||||||||||| |||| ||| || |||||||| ||| |
|
|
| T |
8459650 |
atccttatattccttatctattggctcaaataacttctctagtgaaatttcaaacagaaccttttccaaactctatagtctaggttttctagacttaagt |
8459749 |
T |
|
| Q |
219 |
aattcaaattttctattccagtttgatttagattgggttcctccttttca |
268 |
Q |
| |
|
| || |||| || |||| || || ||||| |||||||||||||| ||||| |
|
|
| T |
8459750 |
agtttaaatattgtatttcaattcgatttggattgggttcctccatttca |
8459799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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